DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and Lima1

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001107017.1 Gene:Lima1 / 65970 MGIID:1920992 Length:753 Species:Mus musculus


Alignment Length:560 Identity:103/560 - (18%)
Similarity:174/560 - (31%) Gaps:225/560 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVPYCHVPCYGALFG-----P 63
            |.:|.|.||..||..:....:|..|.||..|..:|:.|.:|......||. |.:..||.     .
Mouse   388 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK-PHFNQLFKSKGNYD 451

  Fly    64 QLFGH-------GTRVESHKSYGVKGAQKPTGAQANGPPLPRDHLESKLKVYNQFYDNKSLEIRS 121
            :.|||       .::.::.::.| :.||.|...::...|...|...:|:.|.....:.|:...|.
Mouse   452 EGFGHKQHKDLWASKSDNEETLG-RPAQPPNAGESPHSPGVEDAPIAKVGVLAASMEAKASSQRE 515

  Fly   122 REVNNRLVLEGALRVYWGVQGVIHLKEDDDQRILVRKRNSCRVSKAANESSSDKENEASESLAPP 186
            ||  ::......||:.|                                              ||
Mouse   516 RE--DKPAETKKLRIAW----------------------------------------------PP 532

  Fly   187 TTTTAEVDQLSTDVSLSESMTFDSCSLNEISELPTTPEDASANTTANSKEQTNGNVCNDDEDTTT 251
               .||:.  .:..:|.|.:        ::|:....|||               :||.       
Mouse   533 ---PAELG--GSGSALEEGI--------KVSKPKWPPED---------------DVCK------- 562

  Fly   252 TDSSGTLVEAPTASTSCVSSTLPSKLDRLEKLDWDDID-DLLQVERRHNDKDR--------IYET 307
                   .|||                       :|:| ||.::.|..:.|:|        .:.|
Mouse   563 -------TEAP-----------------------EDVDLDLKKLRRSSSLKERSRPFTVAASFRT 597

  Fly   308 MPVKLPSSQSS------SDSSPSKTSTETTTTTESSSTQSASTNTSSTDDFMTATGSLTANTNTQ 366
            ..:|.|.:.|.      |:|..|:.......|.|...|::|..:....:         ...:..|
Mouse   598 SSIKSPKASSPSLRKGWSESEQSEEFGGGIATMERKQTENARPSGEKEN---------VGKSRWQ 653

  Fly   367 NTTTVSTTETSLDNFETCDDATLKPIDFEDFKRSVHQDYVNGANSFTEPNEGTLKRNQPIDPSRI 431
            ......:.:.|  :||         ::.|:|..       |||| ..|.:.....:..|::|   
Mouse   654 GEEVPRSKDRS--SFE---------LESENFME-------NGAN-IAEDDNHVHAQQSPLEP--- 696

  Fly   432 HDSLKLYGENSAMSKSFNCEHALRSIDPTLINDTMNLRSSVGSPHSAQRQYALQKSGSATVTSRD 496
                    |....| .|        :|.|                 |.:::..|       ..:.
Mouse   697 --------EAPGWS-GF--------VDTT-----------------AAKEFTTQ-------NQKS 720

  Fly   497 QKKPYQQG---RQL-FEKGINRSKSGPSCFVYSDSDDDDE 532
            |...:.:|   |:| .|:.|.|::       |.|.|:|:|
Mouse   721 QDVGFWEGEVVRELSVEEQIKRNR-------YYDEDEDEE 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 18/52 (35%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
Lima1NP_001107017.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..66
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..186
Required for interaction with NPC1L1. /evidence=ECO:0000269|PubMed:29880681 164..166
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..326
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 341..379
LIM_Eplin_alpha_beta 388..440 CDD:188869 18/52 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 467..493 5/26 (19%)
Required for interaction with MYO5B. /evidence=ECO:0000269|PubMed:29880681 491..511 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 505..669 44/296 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 682..703 5/32 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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