DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and Crip3

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001102773.1 Gene:Crip3 / 501100 RGDID:1565018 Length:204 Species:Rattus norvegicus


Alignment Length:106 Identity:46/106 - (43%)
Similarity:56/106 - (52%) Gaps:10/106 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WKCHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVPYCHVPCYGALFGPQLF 66
            |.|.:|.:||||||:..|:|..||..||:||.|...|:||.||||...||||.|||||||||:  
  Rat     3 WTCPRCQQPVYFAEKVSSVGKHWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGPR-- 65

  Fly    67 GHGTRVESHKSYGVKGAQKPTGAQAN------GPPLPRDHL 101
              |..:.....|.......|..:..:      .||.||..|
  Rat    66 --GVNIGGVGCYLYNPPSPPPASSISLSPSNFSPPRPRTGL 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 29/52 (56%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
Crip3NP_001102773.1 LIM1_TLP 5..58 CDD:188860 29/52 (56%)
LIM 124..177 CDD:295319
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 1.000 Domainoid score I7882
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000284
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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