DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and Csrp1

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_058844.1 Gene:Csrp1 / 29276 RGDID:62053 Length:193 Species:Rattus norvegicus


Alignment Length:97 Identity:33/97 - (34%)
Similarity:44/97 - (45%) Gaps:6/97 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KCHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVPYCHVPCYGALFGPQLFG 67
            ||..|.|.|||||..|..|..:|..|..|..|.|.|:....|.|....||. .|||..:||:.:|
  Rat     9 KCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCK-SCYGKKYGPKGYG 72

  Fly    68 HG-----TRVESHKSYGVKGAQKPTGAQANGP 94
            :|     ..::..:|.|:|..:.|.......|
  Rat    73 YGQGAGTLSMDKGESLGIKHEEAPGHRPTTNP 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 20/52 (38%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
Csrp1NP_058844.1 LIM1_CRP1 8..63 CDD:188863 22/54 (41%)
Nuclear localization signal. /evidence=ECO:0000255 64..69 1/4 (25%)
LIM2_CRP 119..172 CDD:188787
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000284
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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