DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and valv-1

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_501187.1 Gene:valv-1 / 182010 WormBaseID:WBGene00015216 Length:84 Species:Caenorhabditis elegans


Alignment Length:77 Identity:44/77 - (57%)
Similarity:53/77 - (68%) Gaps:4/77 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWKCHKCGKPVYFAERKQSIGYDWHPECLRC--EECGKRLNPGQHAEHKSVPYCHVPCYGALFGP 63
            |..|..|.||||||||..|:|.|||..||:|  :.|||.|:.|.|:||:..|||: .||||||||
 Worm     1 MPNCPNCQKPVYFAERVSSLGKDWHRPCLKCANKACGKTLSAGSHSEHEGKPYCN-RCYGALFGP 64

  Fly    64 QLFGHGTRVESH 75
            :.:||| ..|||
 Worm    65 KGYGHG-GTESH 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 29/54 (54%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
valv-1NP_501187.1 LIM_TLP_like 4..58 CDD:188785 29/54 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I6071
eggNOG 1 0.900 - - E2759_KOG1700
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000284
OrthoInspector 1 1.000 - - otm14266
orthoMCL 1 0.900 - - OOG6_105083
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5365
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.740

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