DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and mlp-1

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_001367782.1 Gene:mlp-1 / 175847 WormBaseID:WBGene00003375 Length:115 Species:Caenorhabditis elegans


Alignment Length:106 Identity:34/106 - (32%)
Similarity:51/106 - (48%) Gaps:9/106 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KCHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHAEHKSVPYCHVPCYGALFGPQLFG 67
            ||.||||.||.||...:.||.||..|.:|..|.|.|:.....||::..:|. .|:...:||:..|
 Worm    10 KCPKCGKSVYAAEEMSAGGYKWHKFCFKCSMCNKLLDSMSCCEHQAQLFCK-QCHCRRYGPKGIG 73

  Fly    68 HG-----TRVESHKSYG---VKGAQKPTGAQANGPPLPRDH 100
            .|     ..:::.:.:|   |....:|..|:|...|:...|
 Worm    74 FGIGAGSLTMDTGEQFGNTEVDMTNRPMTAEAFTAPINPSH 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 21/52 (40%)
UBQ 660..744 CDD:294102
Nore1-SARAH 762..799 CDD:293125
mlp-1NP_001367782.1 LIM1_MLP84B_like 10..63 CDD:188788 22/53 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000284
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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