DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rassf and mical3

DIOPT Version :9

Sequence 1:NP_651126.3 Gene:Rassf / 42734 FlyBaseID:FBgn0039055 Length:806 Species:Drosophila melanogaster
Sequence 2:XP_031754432.1 Gene:mical3 / 100486205 XenbaseID:XB-GENE-996271 Length:2242 Species:Xenopus tropicalis


Alignment Length:1033 Identity:206/1033 - (19%)
Similarity:314/1033 - (30%) Gaps:381/1033 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CHKCGKPVYFAERKQSIGYDWHPECLRCEECGKRLNPGQHA-----------EHKSVPYCH---- 53
            |:.|.:.||..||..:.|..:|..|.:|:.|...|....:|           .|    ||:    
 Frog   904 CYFCRRRVYVMERLSAEGKFFHRSCFKCDYCSTTLRLSCYAYDLEDGKFYCKPH----YCYRRSG 964

  Fly    54 -----VPCYGALFGPQLFGHGTR-VESHKSYGVKG---------AQKPTGAQANGPPLPRDHLES 103
                 .|...||.|.::    || ||.......:|         |:|..|...||   ..||..:
 Frog   965 YSQRKRPAMPALSGKEV----TRTVEDTPDAEDQGRAPLLPAPAAEKTPGPSVNG---VEDHSAA 1022

  Fly   104 KLKVYNQFYDNKSLEIRSREVNNRLVLEGALRVYWGVQGVIHLKEDDDQRI------------LV 156
            |               |.|....|:.||...         :.|::::.:.:            |:
 Frog  1023 K---------------RLRATPERIELENYR---------VSLQKEELEEVPEETLAEHNLSSLL 1063

  Fly   157 RKRNSCRVSKAANESSSDKENEASE------SLAPPT-----------TTTAEVDQLSTDVSLSE 204
            .|.....|:.:::||..::|.:..|      ...||:           ...|::.....||   |
 Frog  1064 DKGEVEEVASSSSESEMEEEEDEEEEEEEPGECLPPSDLGGVPWKEAVKIHAKLKGQDIDV---E 1125

  Fly   205 SMTFDSCSLNEISELPTTPEDASANTTANSKEQTNGNVCN--------------DDEDTTTTDSS 255
            .:.......:|..|.....||........|.|:  |..|.              .||||.....:
 Frog  1126 VVGTQGAGGSEEEEEEEEEEDEEEEDEEVSSEE--GEYCPWERELQQGLWIQRISDEDTVGIFKA 1188

  Fly   256 GTL-------------VEAPTASTSC----------------VSSTLPSKLDRL----------- 280
            |.|             ::|....|..                ||.:.|||...|           
 Frog  1189 GNLRLQQALSPVDPTEIKADVRWTHVREVKEERRGSKEERGEVSMSSPSKARHLHSHRHDPVRAW 1253

  Fly   281 ----------------EKL--------------------DWDDIDDLLQVERRHNDKDRIYETMP 309
                            |:|                    |.|||....:.|.|.....|    ..
 Frog  1254 LESVSGATGEYEEGEEEELGTCLAQAEAAGDGDTSADLGDDDDIPSDAEAEERLQQSQR----FK 1314

  Fly   310 VKLPSSQ------------SSSDSSPSKT---------STETTTTTESSSTQSASTNTSST---- 349
            :||..:|            :.|:|.||..         |...|...|:......|....::    
 Frog  1315 LKLDVAQEPKVEQPVLPAIADSESVPSPVSLAPKAPVLSPRRTLKAEAEKVPVMSPKAVTSPGGR 1379

  Fly   350 ---DDFMTATGSLTANTNTQNTTTVSTTETSLDNFETCDDAT--------LKPIDFEDFKRSVHQ 403
               |.::....|..|....:..|.:|         ..|....        ..|:.......:...
 Frog  1380 FFADPYLPLDSSNKALVEAKTPTPLS---------PVCSQPVPSQEPVIPTSPVKSPSVPANTRP 1435

  Fly   404 DYVNGANSFTEP---NEGTLK-------RNQ--PIDPSRIHDSLKLYGE--NSAMSKSFNCEHAL 454
            .....|...::|   :||||.       |.|  |:.||.....|...|.  .|....|.|.:..|
 Frog  1436 LISPSAPICSQPLPSSEGTLNATDRPPVRQQPSPLIPSTSLTKLPFTGHVMGSEQLVSPNAKEVL 1500

  Fly   455 RSIDPTLIND----TMNLRSSVG-SPHSAQRQYALQKSGSATVTSRDQ---KKPYQQGRQLFEKG 511
            :.||  ||.:    :..:|.|:| :|....|.:.:.....|:...:.|   .||.:|        
 Frog  1501 KRID--LIEEFWTKSAEIRRSLGLAPVDRDRVHEISFPALASTPLQPQAPKSKPEEQ-------- 1555

  Fly   512 INRSKSGPSCFVYSDSDDDDEATLRPQRMATIRRSDIPQRYIQIQM-----DCYPKENVAAASEG 571
                 ..||              |:||::|  ||.: |.| :.|::     ...|.|....:|:|
 Frog  1556 -----KSPS--------------LKPQQVA--RRVN-PSR-LDIELLSPLTPISPSEKELKSSDG 1597

  Fly   572 ESSRADAPSITSGAAA-GDELTQTEDLYTASEGVDGPDGDGSAGLHVTEDGVVLR------RPPR 629
            |....   |.:||... |..:|:|    .|||..:            |.|..:|.      .||.
 Frog  1598 EKKDI---STSSGLGLNGSSITRT----AASESFN------------TSDSAMLTPPSSPPPPPP 1643

  Fly   630 TGASAIKRRSGNRRSRTKLKRRCSINGHYYNRETSF-------FTPPYGSQMSVWVSSM----VT 683
            .|    :..:..|||||..:          |...|.       ..||...:...|..|:    |.
 Frog  1644 QG----EEPATLRRSRTPCQ----------NGPESIPAPALAQSKPPEPKKSPRWEESVRKSFVE 1694

  Fly   684 TTEVINL---VLEKYKVDSSPGNFSLFIVRDNGEQKRLKDDEYPLITRVTLGPHEDVARIFLVDS 745
            :.:.|..   |.:.|  |....|.||        |:|...   |..:||.  ||    ||..  |
 Frog  1695 SVDEIPFADDVEDTY--DERTENSSL--------QERFFT---PPTSRVK--PH----RIGF--S 1738

  Fly   746 RKTDEI--SNEVAQFLNLSLPE-CRAILERYDQEL-AREVA----KIKERYAELRRRI 795
            ::..||  |:|........||: .:...||.::.: |||.:    .:|:..|:.|.::
 Frog  1739 KENGEIPSSSERVHHRKRLLPDVTQEAKERAEERMKAREKSVKSQALKDAIAQQRHKM 1796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RassfNP_651126.3 LIM_TLP_like 4..57 CDD:188785 17/72 (24%)
UBQ 660..744 CDD:294102 23/97 (24%)
Nore1-SARAH 762..799 CDD:293125 10/40 (25%)
mical3XP_031754432.1 UbiH 87..>226 CDD:357568
CH_MICAL3 514..624 CDD:409100
LIM_Mical 904..958 CDD:188823 14/57 (25%)
PHA03247 1222..>1479 CDD:223021 44/269 (16%)
Herpes_BLLF1 <1358..1622 CDD:282904 63/312 (20%)
DUF3585 2055..2220 CDD:403377
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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