DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cow and Spock3

DIOPT Version :9

Sequence 1:NP_001262857.1 Gene:Cow / 42733 FlyBaseID:FBgn0039054 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_006509579.1 Gene:Spock3 / 72902 MGIID:1920152 Length:452 Species:Mus musculus


Alignment Length:626 Identity:131/626 - (20%)
Similarity:196/626 - (31%) Gaps:284/626 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KYVGETGGDFEFIDEINKNTQSNKNLGEHKRWIHDPSSDLCRPLNCKKREICLLEDEFSAVCVSK 96
            :|..|.|...:|.||:..:.....|.|:......||:.|.|....|.:.::|:.:|..:|:|:|.
Mouse    66 QYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPCLKTKCSRHKVCITQDAQTALCISH 130

  Fly    97 KELHKNRDEIITKAKYLEEEAKRRVNQQDNQDSQDAEDINNDDEDNSSDGGSSNSSPTGTNNAQA 161
            :.|..:..|:                                       |||             
Mouse   131 RRLTHSMKEV---------------------------------------GGS------------- 143

  Fly   162 SVQGNEETDDEDKSLSLGDDDESKEDDVFYENSIAAGDKQQQQQQLSQPAAGPSVIQQDDDEELD 226
                                                     .:|....|::              
Mouse   144 -----------------------------------------HKQWRGLPSS-------------- 153

  Fly   227 NCKPCPVAKPTFLCGADNRTYSSLCRLDYHNCIHSTSIRIACKGFCPCKEIVDGKRLQRISGYNN 291
            .|||||:|..:.:||:|..:|||.|:|:|..|:....|.|.|:|.|||.                
Mouse   154 TCKPCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCP---------------- 202

  Fly   292 KYNKKISLDQQQQQQQQQQQQQQQQQAYKDSNNNNIMMNSGNIMGGNNNDFNTIMNDKEDNNRHN 356
                                             ::..||.|                        
Mouse   203 ---------------------------------SDKSMNIG------------------------ 210

  Fly   357 NHINAQYTFTPEEIKYDNKHYKYLKYTAYKKDSKYQEDKHKMRNYNEVVEKQQQKFNKNSNLNAY 421
                                                      ||....                 
Mouse   211 ------------------------------------------RNVKRA----------------- 216

  Fly   422 PSKSAECKPQQLTAIGNRLLDWFSVIM---ADSKKRRQHSQKSKAHFP----PACKTEAKWMFGH 479
                  |...:...:.|||.|||..:.   :.:||.:...:..::.|.    |.||....|||..
Mouse   217 ------CSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNR 275

  Fly   480 LDLNNDGQLSLQEMYDLEHDQNERCIKPFIDTCDLDTDSSINTREWCRCFEK-TDRPC----AAV 539
            ||.|.|..|...|:..:..|:||:|.|.|.::||...||.|:..|||.||:: .|.||    :.:
Mouse   276 LDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCHTELSNI 340

  Fly   540 RRRIAGDFAGEIGAYAPDCDIQGFYKPTQCHNSVGVCWCVDKHGVEFANTRTRGKPNC------- 597
            ::|  ......:|.|.|.||..|:|||||||.|||.|||||::|.|...:|..|..:|       
Mouse   341 QKR--QGIKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVVGSRINGVADCAIDFEIS 403

  Fly   598 ------------------ESVVNNAASLTSDDEDEGADDED 620
                              :.::|:...:..||||||.||:|
Mouse   404 GDFASGDFREWTDDEGEEDDIMNDKDDIEDDDEDEGDDDDD 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CowNP_001262857.1 KAZAL <240..272 CDD:197624 14/31 (45%)
SPARC_EC 427..539 CDD:238155 41/123 (33%)
SPARC_Ca_bdg 427..526 CDD:287550 34/105 (32%)
TY 535..597 CDD:238114 28/65 (43%)
Spock3XP_006509579.1 Kazal_2 153..201 CDD:369449 21/61 (34%)
EFh_SPARC_TICN3 217..329 CDD:320018 38/111 (34%)
EF-hand motif 265..296 CDD:320018 11/30 (37%)
EF-hand motif 297..327 CDD:320018 15/29 (52%)
TY 332..396 CDD:238114 28/65 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839431
Domainoid 1 1.000 74 1.000 Domainoid score I9094
eggNOG 1 0.900 - - E1_KOG3555
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 234 1.000 Inparanoid score I3399
Isobase 1 0.950 - 0 Normalized mean entropy S6033
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002140
OrthoInspector 1 1.000 - - otm43625
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5366
SonicParanoid 1 1.000 - - X1424
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.730

Return to query results.
Submit another query.