DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cow and cracdlb

DIOPT Version :10

Sequence 1:NP_001262857.1 Gene:Cow / 42733 FlyBaseID:FBgn0039054 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_005160178.1 Gene:cracdlb / 571514 ZFINID:ZDB-GENE-090313-40 Length:832 Species:Danio rerio


Alignment Length:702 Identity:116/702 - (16%)
Similarity:228/702 - (32%) Gaps:261/702 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 ELHKNRDEIITKAKYLEEEAKRR----VNQQDNQ----DSQDAEDINNDDE----DNSSD----- 145
            ::.||.:|:..:.|...::.|.|    :.:::::    .||.|.|||..|.    |:|.|     
Zfish     7 DMDKNAEELTGRKKSRFKQLKTRLFGKLKKKESEGLIKQSQSASDINAPDSRRGGDDSEDEFTYP 71

  Fly   146 -GGS----SNSSPTGTNNAQAS----VQGNEETDDEDKSLSL---------------------GD 180
             |.|    |:.|...|:..|::    |...|....:.|:|.|                     .|
Zfish    72 QGLSPRALSHDSIFFTDQTQSTEPTRVLSQENVHGKIKALQLKLQQQNLHLGPPPMLIPGKRTED 136

  Fly   181 DDESKEDD---------VFYEN-------------------SIA-AGDKQQQQQQLSQPAAGP-S 215
            ...:.|||         ..||.                   |:| .|.::::|..|.|.::.| |
Zfish   137 SGATSEDDGLPCSPPETYLYERVMHGGIYKYPEPRKHLSSLSLAGTGSEEEEQGDLFQSSSRPLS 201

  Fly   216 VIQQDDDEELDNCKPCPVAKPTFLCGAD-NRTYSSLCRLDYHNCIHSTSIRIACKGFCPCKEIVD 279
            .:.:...:.: .|....:|.||  .|.| :...|....||.....|..|::              
Zfish   202 PVFKPSSQSI-ICSSSSLATPT--VGVDFSSPASYTATLDNSAAHHRMSVK-------------- 249

  Fly   280 GKRLQRISGYNNKYNKKISLDQQQQQQQQQQQQQQQQQAYKDSNNNNIMMNSGNIMGGNNNDFNT 344
             .|.||.|...|: ...:|:..:::.:                               :.:|.::
Zfish   250 -PRNQRASTRGNR-GPAVSISPRKRSE-------------------------------SISDLDS 281

  Fly   345 IMNDKEDNN---------------RHNNH------INAQYTF-----TPEEIKYDNKHYKYLKYT 383
            |:::|:|::               .|.:|      |..:.|.     ||.:|:            
Zfish   282 ILSEKDDDDDDEVDDEIMTSTETVHHLSHSPPTVEIKVETTIPEAPETPVQIQ------------ 334

  Fly   384 AYKKDSKYQEDKHKMRNYN------EVVEKQQQ-----KFNKNS-NLNAYPSKSAECKPQQLTAI 436
                    :||:.|:...:      |:::.|:.     |...|. .|...|..|....|..|..:
Zfish   335 --------EEDEEKLSTPHLTPLSAEILKSQESLEPEGKLTMNPLYLQPMPFGSGPPSPSGLPEV 391

  Fly   437 GNRLLDWFSVIMAD--------SKKRRQHSQKSKAH---------------FPPACKTEAKWMF- 477
              .|::..|.|..|        :|:..:....::.|               .||:.|...:.:. 
Zfish   392 --HLIEAESFIQKDGMHDIQIVAKESMKEEPSTRFHPVPLPRAKKPKVEIKSPPSPKASTESVSL 454

  Fly   478 --------GHLDLNNDGQL--------------SLQEMYDLEHD---------QNERCIKPFIDT 511
                    .....|||..|              :|:.:.|.|.:         :.::.|:...||
Zfish   455 QFLLASAKNRSKTNNDATLNEGDLKMKMQTINSNLEVLKDEEKETKPVENLLYRMQKSIEKIEDT 519

  Fly   512 CDLDTDSSINTREWCRCFEKTDRPCAAVRRRIA-GDFAGEIGAYAPDCDIQGFYKPTQCHNSVGV 575
            ..:                :.:.|...|..::| |....::.:...:.|.:...:|.:..::.||
Zfish   520 KSI----------------RREAPAPPVMSKLAPGTNGKKVDSPTENVDSEKQEEPEERRSAFGV 568

  Fly   576 CWCVDKHGVEFANTRTRGKPNCESVVNNAASLTSDDEDEGADDEDSAEGSAD 627
            ........:::.:..:|.|...:.....::::.:|.| |.|...:...|::|
Zfish   569 HLRTTSLSLKYRSEVSRMKDETKRYSLESSTVLADSE-EHAGKAEVFRGASD 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CowNP_001262857.1 KAZAL <240..272 CDD:197624 7/32 (22%)
EFh_SPARC_TICN 428..533 CDD:320011 21/159 (13%)
EF-hand motif 469..500 CDD:320011 8/62 (13%)
EF-hand motif 501..533 CDD:320011 3/31 (10%)
TY 535..597 CDD:238114 10/62 (16%)
cracdlbXP_005160178.1 DUF4592 123..258 CDD:464602 29/152 (19%)
PRK13914 <597..>782 CDD:237555 6/24 (25%)

Return to query results.
Submit another query.