DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cow and Spock1

DIOPT Version :9

Sequence 1:NP_001262857.1 Gene:Cow / 42733 FlyBaseID:FBgn0039054 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_038951544.1 Gene:Spock1 / 306759 RGDID:1311496 Length:444 Species:Rattus norvegicus


Alignment Length:660 Identity:139/660 - (21%)
Similarity:208/660 - (31%) Gaps:293/660 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LIASACL--ALVLMSSSLIGSTEARNKKKYVGETGGDFEFIDEINKNTQSNKNLGEHKRWIHDPS 68
            |...|.|  |..|.:...:.:....::.||......:.|  |:..:|...||...:    ..|||
  Rat    27 LAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRFRDEVE--DDYFRNWNPNKPFDQ----ALDPS 85

  Fly    69 SDLCRPLNCKKREICLLEDEFSAVCVSKKELHKNRDEIITKAKYLEEEAKRRVNQQDNQDSQDAE 133
            .|.|..:.|...::|:.:|..:|:|||:|.|...:                              
  Rat    86 KDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ------------------------------ 120

  Fly   134 DINNDDEDNSSDGGSSNSSPTGTNNAQASVQGNEETDDEDKSLSLGDDDESKEDDVFYENSIAAG 198
                                                               |:..|.:::.:   
  Rat   121 ---------------------------------------------------KKGSVAHKHWV--- 131

  Fly   199 DKQQQQQQLSQPAAGPSVIQQDDDEELDNCKPCPVAKPTFLCGADNRTYSSLCRLDYHNCIHSTS 263
                          |||        .|..|||||||:...:||:|..||:|.|:|::|.|....|
  Rat   132 --------------GPS--------NLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKS 174

  Fly   264 IRIACKGFCPCKEIVDGKRLQRISGYNNKYNKKISLDQQQQQQQQQQQQQQQQQAYKDSNNNNIM 328
            :...|.|.|||                        |.:.:.:.|:.:.:                
  Rat   175 LSSLCDGPCPC------------------------LPEPEPEPQKPKAE---------------- 199

  Fly   329 MNSGNIMGGNNNDFNTIMNDKEDNNRHNNHINAQYTFTPEEIKYDNKHYKYLKYTAYKKDSKYQE 393
                                                                             
  Rat   200 ----------------------------------------------------------------- 199

  Fly   394 DKHKMRNYNEVVEKQQQKFNKNSNLNAYPSKSAECKPQQLTAIGNRLLDWFSVIMADSKK--RRQ 456
                                          ||| |..::|..:.:||.|||..:..|:.:  :..
  Rat   200 ------------------------------KSA-CTDKELRNLASRLKDWFGALHEDANRVIKPT 233

  Fly   457 HSQKSKAHFP----PACKTEAKWMFGHLDLNNDGQLSLQEMYDLEHDQNERCIKPFIDTCDLDTD 517
            .|..::..|.    |.||....|||..||:|.|..|...|:..:..|:.|.||||..::||...|
  Rat   234 SSDTTQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKD 298

  Fly   518 SSINTREWCRCFEKT-DRPCAAVRRRIAGDFAGE--IGAYAPDCDIQGFYKPTQCHNSVGVCWCV 579
            ..::..|||.||:|. ..||.....||.....|:  :||:.|.|:.:|:||.||||.|.|.||||
  Rat   299 GKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHGSTGQCWCV 363

  Fly   580 DKHGVEFANTRTRGKPNCE-------------SVV---------------------NNAASLTSD 610
            ||:|.|.|.:|.:|..:||             |||                     .:..::..|
  Rat   364 DKYGNELAGSRKQGTVSCEEEQETSGDFGSGGSVVLLDDLDDERELGPKDKEGKLRVHTRAVRED 428

  Fly   611 DEDEGADDED 620
            ||||..|.||
  Rat   429 DEDEDDDKED 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CowNP_001262857.1 KAZAL <240..272 CDD:197624 13/31 (42%)
SPARC_EC 427..539 CDD:238155 39/118 (33%)
SPARC_Ca_bdg 427..526 CDD:287550 32/104 (31%)
TY 535..597 CDD:238114 29/63 (46%)
Spock1XP_038951544.1 Kazal_2 139..>176 CDD:400135 18/36 (50%)
EFh_SPARC_EC 203..314 CDD:330171 37/110 (34%)
EF-hand motif 250..281 CDD:320009 11/30 (37%)
EF-hand motif 282..314 CDD:320009 14/31 (45%)
TY 317..378 CDD:238114 28/60 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343249
Domainoid 1 1.000 75 1.000 Domainoid score I8825
eggNOG 1 0.900 - - E1_KOG3555
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 240 1.000 Inparanoid score I3259
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1235834at2759
OrthoFinder 1 1.000 - - FOG0002140
OrthoInspector 1 1.000 - - otm45701
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12352
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1424
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.860

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