DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cow and spock2

DIOPT Version :9

Sequence 1:NP_001262857.1 Gene:Cow / 42733 FlyBaseID:FBgn0039054 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_002664230.1 Gene:spock2 / 100320541 ZFINID:ZDB-GENE-090312-170 Length:422 Species:Danio rerio


Alignment Length:607 Identity:123/607 - (20%)
Similarity:185/607 - (30%) Gaps:285/607 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 EFIDEINKNTQSNKNLGEHKRWIHDPSSDLCRPLNCKKREICLLEDEFSAVCVSKKEL-HKNRDE 105
            ::|...::|..||:|:        |.:.|.|:.:.|.:.::|:.:....||||::|:| |:.:.:
Zfish    68 DYIRSWDENQGSNENV--------DTTKDPCQKVKCSRHKVCVAQGYQRAVCVNRKKLEHRLKQQ 124

  Fly   106 IITKAKYLEEEAKRRVNQQDNQDSQDAEDINNDDEDNSSDGGSSNSSPTGTNNAQASVQGNEETD 170
            :|                                                               
Zfish   125 VI--------------------------------------------------------------- 126

  Fly   171 DEDKSLSLGDDDESKEDDVFYENSIAAGDKQQQQQQLSQPAAGPSVIQQDDDEELDNCKPCPVAK 235
                                         :|||:                     .|||||||:.
Zfish   127 -----------------------------RQQQE---------------------SNCKPCPVSS 141

  Fly   236 PTFLCGADNRTYSSLCRLDYHNCIHSTSIRIACKGFCPCKEIVDGKRLQRISGYNNKYNKKISLD 300
            ...:||:|...|:|.|:|:...|:....:::.|.|.|||.                         
Zfish   142 SGPVCGSDGHNYASQCKLEQQACLAGKELKVRCPGLCPCT------------------------- 181

  Fly   301 QQQQQQQQQQQQQQQQQAYKDSNNNNIMMNSGNIMGGNNNDFNTIMNDKEDNNRHNNHINAQYTF 365
                                                                           ..
Zfish   182 ---------------------------------------------------------------AT 183

  Fly   366 TPEEIKYDNKHYKYLKYTAYKKDSKYQEDKHKMRNYNEVVEKQQQKFNKNSNLNAYPSKSAECKP 430
            |......|.||                                                 ..|..
Zfish   184 TAPATDVDGKH-------------------------------------------------ESCTG 199

  Fly   431 QQLTAIGNRLLDWFSVIMADSKKRRQHSQKSKA---------HFPPACKTEAKWMFGHLDLNNDG 486
            |.|..:|:||.|||.::..:.|   |:|..|.|         .....||....|||..||.|:|.
Zfish   200 QDLADLGDRLRDWFQLLQGNGK---QNSTGSPAASSASIVDRTLVATCKDSIGWMFSKLDTNSDL 261

  Fly   487 QLSLQEMYDLEHDQNERCIKPFIDTCDLDTDSSINTREWCRCFEKTDRPCAAVRRRIAGDFAGEI 551
            .|...|:..:..|:.|.||:||.::||...|..::|.|||.||.:...||.|...||    ..:.
Zfish   262 YLDQAELAAINLDKYEVCIRPFFNSCDSYRDGKVSTAEWCLCFWREKPPCLAELERI----QLQE 322

  Fly   552 GA------YAPDCDIQGFYKPTQCHNSVGVCWCVDKHGVEFANTRTRGKPNCESVVNNAASLTS- 609
            ||      |.|.||..|||:..||..|.|.|||||:||.|...:|..|.|:|:.||..:....| 
Zfish   323 GAKKKSDTYIPSCDEDGFYRRLQCDKSRGECWCVDQHGGELMGSRIHGNPDCDEVVTYSGDFGSG 387

  Fly   610 ---DDEDEGADDEDSAEGSADQ 628
               :||:|...:|:..|...::
Zfish   388 LGWEDEEEKEAEENGEEAEEEE 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CowNP_001262857.1 KAZAL <240..272 CDD:197624 10/31 (32%)
SPARC_EC 427..539 CDD:238155 42/120 (35%)
SPARC_Ca_bdg 427..526 CDD:287550 36/107 (34%)
TY 535..597 CDD:238114 29/67 (43%)
spock2XP_002664230.1 Kazal_2 137..180 CDD:284958 14/42 (33%)
SPARC_Ca_bdg 195..301 CDD:287550 36/108 (33%)
SPARC_EC 196..314 CDD:238155 42/120 (35%)
Thyroglobulin_1 311..374 CDD:278514 28/66 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583551
Domainoid 1 1.000 75 1.000 Domainoid score I9006
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 232 1.000 Inparanoid score I3406
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1235834at2759
OrthoFinder 1 1.000 - - FOG0002140
OrthoInspector 1 1.000 - - otm25402
orthoMCL 1 0.900 - - OOG6_110187
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1424
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.800

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