DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cow and spock3

DIOPT Version :9

Sequence 1:NP_001262857.1 Gene:Cow / 42733 FlyBaseID:FBgn0039054 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001096196.1 Gene:spock3 / 100124745 XenbaseID:XB-GENE-983158 Length:433 Species:Xenopus tropicalis


Alignment Length:663 Identity:136/663 - (20%)
Similarity:206/663 - (31%) Gaps:295/663 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ASACLALVLMSSSLIGSTEARNKK--------------KYVGETGGDF-EFIDEINKNTQSNKNL 57
            |:||..::..:::...:...|:.:              :|..:..|.: .|.||:..:.....|.
 Frog    11 AAACSQVLAAAAAAAAAATGRSDRGNFLDDKQWLTTVSQYDKDAAGHWNRFRDEVEDDYFRTWNP 75

  Fly    58 GEHKRWIHDPSSDLCRPLNCKKREICLLEDEFSAVCVSKKELHKNRDEIITKAKYLEEEAKRRVN 122
            |.......|||.|.|..:.|.:.::|:.:|:.:|||:|.:.:..:..|.....||..        
 Frog    76 GRPFDQALDPSKDPCLKVKCSRHKVCIAQDQETAVCISHRRITHSMKEAGLSYKYWR-------- 132

  Fly   123 QQDNQDSQDAEDINNDDEDNSSDGGSSNSSPTGTNNAQASVQGNEETDDEDKSLSLGDDDESKED 187
                                    |...||                                   
 Frog   133 ------------------------GVPLSS----------------------------------- 138

  Fly   188 DVFYENSIAAGDKQQQQQQLSQPAAGPSVIQQDDDEELDNCKPCPVAKPTFLCGADNRTYSSLCR 252
                                                   :||.||:.....:||:|..||||.|:
 Frog   139 ---------------------------------------SCKQCPIINTNPVCGSDGHTYSSQCK 164

  Fly   253 LDYHNCIHSTSIRIACKGFCPCKEIVDGKRLQRISGYNNKYNKKISLDQQQQQQQQQQQQQQQQQ 317
            |:|..|:....|.:.|:|.|||                                           
 Frog   165 LEYQACLSGKQISVKCEGHCPC------------------------------------------- 186

  Fly   318 AYKDSNNNNIMMNSGNIMGGNNNDFNTIMNDKEDNNRHNNHINAQYTFTPEEIKYDNKHYKYLKY 382
                                                            :|.::|           
 Frog   187 ------------------------------------------------SPNKLK----------- 192

  Fly   383 TAYKKDSKYQEDKHKMRNYNEVVEKQQQKFNKNSNLNAYPSKSAECKPQQLTAIGNRLLDWFSVI 447
            ||.|.:.:.                                    |..::...|.|||.|||..:
 Frog   193 TASKTNKRV------------------------------------CTDREFREIANRLRDWFKAL 221

  Fly   448 MA---DSKKRRQHSQKSKAHFP----PACKTEAKWMFGHLDLNNDGQLSLQEMYDLEHDQNERCI 505
            ..   .:||.:..::..::.|.    |.|:....|||..||.|.|..|...|:..:..|:||:|.
 Frog   222 HESGFQNKKSKTVTRAERSRFDTSILPICRDSLGWMFNRLDTNYDLLLDQSELGSIYIDKNEQCT 286

  Fly   506 KPFIDTCDLDTDSSINTREWCRCFEK-TDRPCAAVRRRIAGDFAGE--IGAYAPDCDIQGFYKPT 567
            |.|.:|||...||.|:..|||.||:: .|.||......|.....|:  :|.|.|.||..|:||||
 Frog   287 KAFFNTCDTYKDSLISNNEWCYCFQRQQDPPCQTELGNIQKQQGGKKLLGYYIPVCDEDGYYKPT 351

  Fly   568 QCHNSVGVCWCVDKHGVEFANTRTRGKPNC-------------------------ESVVNNAASL 607
            |||.|||.|||||::|.|.:.:|..|...|                         :.::|:...:
 Frog   352 QCHGSVGQCWCVDRYGNEVSGSRKIGSAECGSDSETSGDFGSGDFHDWTDEEDDEDEMMNDEDEI 416

  Fly   608 TSDDEDEGADDED 620
            ..|||||| ||||
 Frog   417 EDDDEDEG-DDED 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CowNP_001262857.1 KAZAL <240..272 CDD:197624 14/31 (45%)
SPARC_EC 427..539 CDD:238155 42/119 (35%)
SPARC_Ca_bdg 427..526 CDD:287550 35/105 (33%)
TY 535..597 CDD:238114 29/63 (46%)
spock3NP_001096196.1 KAZAL 142..184 CDD:197624 16/41 (39%)
EFh_SPARC_TICN3 202..314 CDD:320018 39/111 (35%)
TY 317..381 CDD:238114 29/63 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 78 1.000 Domainoid score I8640
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 238 1.000 Inparanoid score I3283
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1235834at2759
OrthoFinder 1 1.000 - - FOG0002140
OrthoInspector 1 1.000 - - otm48788
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5366
SonicParanoid 1 1.000 - - X1424
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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