DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17121 and rdh20

DIOPT Version :9

Sequence 1:NP_651114.1 Gene:CG17121 / 42721 FlyBaseID:FBgn0039043 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_021332944.1 Gene:rdh20 / 555864 ZFINID:ZDB-GENE-131127-122 Length:316 Species:Danio rerio


Alignment Length:297 Identity:84/297 - (28%)
Similarity:143/297 - (48%) Gaps:29/297 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 IVFLLLLPLVLLAV---FLKHLLDYLFALGLKEKDVSGKVALVTGGGSGLGREICLELARRGCKL 119
            ::||:.|.::||.|   .|:..|..:|.  .:.|.:.|::.|:||.|..|||...||..:.|.::
Zfish     1 MIFLMDLQVMLLDVLYFILRSCLRLVFR--PRTKPIDGELVLITGSGGALGRLFALEFTKHGAEV 63

  Fly   120 AVVDVNSKGCYETVELLSKIPRCVAKAYKNDVSSPRELQLMAAKVEKELG-PVDILVNNASLMPM 183
            .:.|||.:...:|.:|: :.....|.||..||:...|:...|..|.:|:| .|..|||||.::..
Zfish    64 VLWDVNGEANEDTAKLV-RARGGQAHAYTVDVTKREEVYRTADLVREEVGRDVTYLVNNAGVVAG 127

  Fly   184 TSTPSLKSDEIDTILQLNLGSYIMTTKEFLPKMINRKSGHLVAVNALAGLVPLPGAGIYTATKYG 248
            ..........::..|::|..:...|.|.|||:|.::..||::.:.::.||........|.|:|:.
Zfish   128 ERLLDCPDYLLERTLKVNCHALFWTVKAFLPQMKDKNHGHIITIASVLGLFSTACVEDYCASKFA 192

  Fly   249 IEGFMESLRAELRLSDCDYVRTTVANAYLMRTSGDLPLLSDAG----------IAKSYPGLPTPY 303
            ..||.|||..||...|.|.|:||:...|::          |.|          :|...|.|...|
Zfish   193 AVGFHESLAHELLTEDLDGVKTTLVCPYIV----------DTGMFEGCRIREEVALILPPLEPLY 247

  Fly   304 VAEKIVKGVLLNERMVYVPKIFALSVWLLRLLPTKWQ 340
            ..::.:..:|:::.:|.:|::..|......|||  |:
Zfish   248 CVQQAMNAILIDQPLVCIPRLTYLPFLARALLP--WE 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17121NP_651114.1 DltE 91..349 CDD:223377 74/261 (28%)
NADB_Rossmann 94..338 CDD:304358 72/254 (28%)
rdh20XP_021332944.1 17beta-HSDXI-like_SDR_c 38..282 CDD:187598 72/256 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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