DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17121 and RDH12

DIOPT Version :10

Sequence 1:NP_651114.1 Gene:CG17121 / 42721 FlyBaseID:FBgn0039043 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_689656.2 Gene:RDH12 / 145226 HGNCID:19977 Length:316 Species:Homo sapiens


Alignment Length:272 Identity:70/272 - (25%)
Similarity:112/272 - (41%) Gaps:53/272 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 LLLPLVLLAVFLKHL------LDYLFALGLKEKDVS--GKVALVTGGGSGLGREICLELARRGCK 118
            :|:.|.||..|...|      :...||.|:...:|.  |||.::||..:|:|:|...|||.||.:
Human     1 MLVTLGLLTSFFSFLYMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGAR 65

  Fly   119 --LAVVDVNSKGCYETVELLSKIPRCVAKAYKNDVSSPRELQLMAAKVEKELGPVDILVNNASLM 181
              :|..|| .||.....|:............|.|:|..:.::..|.....|...:.||:|||.:|
Human    66 VYIACRDV-LKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVM 129

  Fly   182 --PMTSTPSLKSDEIDTILQLN-LGSYIMTTKEFLPKMINRKSGHLVAVNALA---GLVPLPGAG 240
              |.:.|    :|..:|.|.:| ||.:::|.. .|.::.......:|.|:::|   |.:|     
Human   130 MCPYSKT----ADGFETHLGVNHLGHFLLTYL-LLERLKVSAPARVVNVSSVAHHIGKIP----- 184

  Fly   241 IYTATKYGIEGFMESLRAELRLS-DCDYVRTTVANAYLMRTSGDLPLLSDAGIAKSYPGLPTPYV 304
                        ...|::|.|.| ...|..:.:||....|.           :||...|  |...
Human   185 ------------FHDLQSEKRYSRGFAYCHSKLANVLFTRE-----------LAKRLQG--TGVT 224

  Fly   305 AEKIVKGVLLNE 316
            ...:..||:.:|
Human   225 TYAVHPGVVRSE 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17121NP_651114.1 Rossmann-fold NAD(P)(+)-binding proteins 94..338 CDD:473865 58/232 (25%)
RDH12NP_689656.2 retinol-DH_like_SDR_c 39..307 CDD:212495 60/234 (26%)

Return to query results.
Submit another query.