DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13833 and rdh20

DIOPT Version :9

Sequence 1:NP_651111.1 Gene:CG13833 / 42718 FlyBaseID:FBgn0039040 Length:321 Species:Drosophila melanogaster
Sequence 2:XP_021332944.1 Gene:rdh20 / 555864 ZFINID:ZDB-GENE-131127-122 Length:316 Species:Danio rerio


Alignment Length:311 Identity:86/311 - (27%)
Similarity:141/311 - (45%) Gaps:45/311 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IIALIGLAAITPLLILVALLGRLIAKLCWCSAPKSIAGEVAVVTGAGHGLGRAISLELAKKGCHI 79
            :|.|:.|..:  ||.::..:.|...:|.:....|.|.||:.::||:|..|||..:||..|.|..:
Zfish     1 MIFLMDLQVM--LLDVLYFILRSCLRLVFRPRTKPIDGELVLITGSGGALGRLFALEFTKHGAEV 63

  Fly    80 AVVDINVSGAEDTVKQIQDIYKVR---AKAYKANVTNYDDLVELNSKVVEEMG-PVTVLVNNAGV 140
            .:.|:|....|||.|    :.:.|   |.||..:||..:::......|.||:| .||.|||||||
Zfish    64 VLWDVNGEANEDTAK----LVRARGGQAHAYTVDVTKREEVYRTADLVREEVGRDVTYLVNNAGV 124

  Fly   141 MMHRNMFNPDPADVQLMINVNLTSHFWTKLVFLPKMKELRKGFIVTISSLAGVFPLPYSATYTTT 205
            :....:.:.....::..:.||..:.|||...|||:||:...|.|:||:|:.|:|.......|..:
Zfish   125 VAGERLLDCPDYLLERTLKVNCHALFWTVKAFLPQMKDKNHGHIITIASVLGLFSTACVEDYCAS 189

  Fly   206 KSGALAHMRTLRMELDLENQKDIHVTTVLPSFLRTNSDVTQLTHTIGFGDVYPLFTG----EEVA 266
            |..|:....:|..||..|:...:..|.|.|..:.|.                 :|.|    ||||
Zfish   190 KFAAVGFHESLAHELLTEDLDGVKTTLVCPYIVDTG-----------------MFEGCRIREEVA 237

  Fly   267 ------------QRIVAGMVRGEAEITVPGMACLLYRVILILPADWQDRII 305
                        |:.:..::..:..:.:|.:..|.:....:||  |:...:
Zfish   238 LILPPLEPLYCVQQAMNAILIDQPLVCIPRLTYLPFLARALLP--WESNAV 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13833NP_651111.1 adh_short 53..241 CDD:278532 63/191 (33%)
NADB_Rossmann 54..297 CDD:304358 72/262 (27%)
rdh20XP_021332944.1 17beta-HSDXI-like_SDR_c 38..282 CDD:187598 74/266 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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