DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and egr4

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001107925.1 Gene:egr4 / 795099 ZFINID:ZDB-GENE-080204-90 Length:352 Species:Danio rerio


Alignment Length:356 Identity:80/356 - (22%)
Similarity:132/356 - (37%) Gaps:110/356 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 PCSSPHLDAWLNFNLGEISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMCA 280
            |||:   ||.||. |.||...:.:...:.:.|.:..::        .|.|..|:.|:|:  .:|.
Zfish    70 PCST---DALLNI-LTEIVGISDNFCGNSRAGALSRQE--------SLLSTGSSLGSPE--SLCN 120

  Fly   281 SNYEDYANLYQQ-----------GSGYSTENYHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQ 334
            .:.:::|:...|           ||..|..:..:.......:|:          :||:::     
Zfish   121 DSSDEFADTSAQQLAFPAIKSEFGSSCSGGDLFDGFCTSSHEPS----------DLDDII----- 170

  Fly   335 QFLQHHLQQQHLQEQQEQLHQPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEE 399
                             .|..|.|.|..:          :.|.:||                  :
Zfish   171 -----------------DLLSPLGPETDS----------VLDTWIK------------------Q 190

  Fly   400 DDLDNDVFAPPAESDPKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVR 464
            :.||..:...||.|.              ||.:........|..:......|...|.::.....|
Zfish   191 EPLDFQLPVAPAPSH--------------ENSLYISFPNAFGLADALDSLLATNTHAQRSKPRAR 241

  Fly   465 KG----EDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRS 525
            ||    :.|||....|.||   |:...:|..|:|:|:|.||.:|..  |.:.|||.::|..|.|:
Zfish   242 KGAAREKPFSCPVESCERR---FSRSDELNRHVRIHTGHKPFQCRV--CLRCFSRSDHLTTHMRT 301

  Fly   526 HTGERPYGCQYKGCLKAFSNSSDRAKHQRTH 556
            ||||:|:.|..  |.:.|:.|.:|.:|.|.|
Zfish   302 HTGEKPFSCDV--CARRFARSDERKRHMRVH 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 26/64 (41%)
C2H2 Zn finger 504..526 CDD:275368 8/21 (38%)
C2H2 Zn finger 534..556 CDD:275368 7/21 (33%)
C2H2 Zn finger 564..586 CDD:275368
egr4NP_001107925.1 C2H2 Zn finger 252..274 CDD:275368 8/24 (33%)
COG5048 278..>344 CDD:227381 23/57 (40%)
C2H2 Zn finger 282..302 CDD:275368 8/21 (38%)
zf-H2C2_2 294..319 CDD:463886 11/26 (42%)
C2H2 Zn finger 310..330 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.

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