DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and klf7

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001072934.1 Gene:klf7 / 780396 XenbaseID:XB-GENE-1012735 Length:296 Species:Xenopus tropicalis


Alignment Length:110 Identity:38/110 - (34%)
Similarity:56/110 - (50%) Gaps:15/110 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 PRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLK 541
            |....|.|.:       |||      :|.|.||.|.:::..:||.|||:||||:||.|.::||..
 Frog   201 PGEASPENKK-------RVH------RCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWEGCEW 252

  Fly   542 AFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNH 586
            .|:.|.:..:|.|.|...||:.|.  .|.:.::....|..|:|.|
 Frog   253 RFARSDELTRHYRKHTGAKPFKCN--HCDRCFSRSDHLALHMKRH 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 33/91 (36%)
C2H2 Zn finger 504..526 CDD:275368 10/21 (48%)
C2H2 Zn finger 534..556 CDD:275368 7/21 (33%)
C2H2 Zn finger 564..586 CDD:275368 5/21 (24%)
klf7NP_001072934.1 KLF7_N 2..214 CDD:409244 6/25 (24%)
COG5048 193..>278 CDD:227381 33/91 (36%)
C2H2 Zn finger 218..237 CDD:275368 8/18 (44%)
C2H2 Zn finger 245..267 CDD:275368 7/21 (33%)
zf-C2H2 273..295 CDD:395048 5/23 (22%)
C2H2 Zn finger 275..295 CDD:275368 5/21 (24%)

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