DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and sp9

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001072269.1 Gene:sp9 / 779722 XenbaseID:XB-GENE-5931012 Length:422 Species:Xenopus tropicalis


Alignment Length:463 Identity:111/463 - (23%)
Similarity:149/463 - (32%) Gaps:119/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 NQSPCSS-PHLDAWLNFNLGEISAAASSSAASPKLGNVFEEQVKEEASPA---KLPSMNSTFGTP 273
            |.||.|| |...|:..........::||.:....||..  ......||.|   ...:.||.|...
 Frog    29 NTSPLSSLPESSAFAKGGFHPWKRSSSSCSLGSSLGGF--AVATSRASGALTGGTATANSAFCLA 91

  Fly   274 KCIPMCASNYEDYANLYQQGSGYSTENYHNNMAQVVEKPNREHKAI------------WTIDELD 326
            ...|..::...||:.|:...||.|.:......| .:.|.:...:.:            |......
 Frog    92 STSPTSSAFSSDYSGLFSSASGVSPQESAGQSA-FISKVHASAEGLYPRVGMAHPYESWYKSGFH 155

  Fly   327 ELMLGEQQQFLQHHLQQQ----HLQEQQEQLHQ---PHGQEQQTQNCKDDLVNYLSDEFIKAEEF 384
            ..:.|....:...|....    .:|..|..||.   .|||          |..|..|       |
 Frog   156 SDVSGGASAWWDVHAAGPSTWLEVQNTQGALHSGAAAHGQ----------LGAYSPD-------F 203

  Fly   385 RSLDSDDDENYNEE------EDDLDNDVFAPPAESDPKPDSTCCDPEAEPENEVIPLICRWTGCD 443
            .||......:....      :..|..|.|.|...|.|....              |::....|..
 Frog   204 SSLTHSAFSSTGASHLLPGGQHLLTQDAFKPVLPSYPDSGG--------------PMLSGAAGTG 254

  Fly   444 EEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCP-----RRYKPFNARYKLLIHMRVHSGEKPNK 503
            .....:.|           .|.....:|   |||     .|..|..|.   |....:||      
 Frog   255 AGGTGRSA-----------RRYSGRATC---DCPNCQEAERLGPAGAS---LRRKGLHS------ 296

  Fly   504 CPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPG 568
            |..|||.|.:.:..:||.|.|.||||||:.|.:..|.|.|:.|.:..:|.|||...|.:||  |.
 Frog   297 CHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFAC--PV 359

  Fly   569 CTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGASVPPSGPKKAA---------KTRRHSESAL 624
            |.||:.....|.||:|.|     ||       ||     .|.||.:         :|.|.....|
 Frog   360 CNKRFMRSDHLSKHIKTH-----NG-------GG-----GGGKKGSDSDTDASNLETPRSESPEL 407

  Fly   625 VQRGVGAG 632
            :..||..|
 Frog   408 IMEGVRPG 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 36/91 (40%)
C2H2 Zn finger 504..526 CDD:275368 9/21 (43%)
C2H2 Zn finger 534..556 CDD:275368 7/21 (33%)
C2H2 Zn finger 564..586 CDD:275368 9/21 (43%)
sp9NP_001072269.1 SP9_N 19..296 CDD:411695 60/317 (19%)
9aaTAD, inactive. /evidence=ECO:0000250|UniProtKB:P0CG40 163..171 1/7 (14%)
C2H2 Zn finger 300..319 CDD:275368 8/18 (44%)
zf-H2C2_2 311..338 CDD:463886 14/26 (54%)
C2H2 Zn finger 327..349 CDD:275368 7/21 (33%)
zf-H2C2_2 341..364 CDD:463886 10/24 (42%)
zf-C2H2 355..377 CDD:395048 10/23 (43%)
C2H2 Zn finger 357..377 CDD:275368 9/21 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 372..422 17/61 (28%)

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