DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and klf11

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_012818552.1 Gene:klf11 / 733909 XenbaseID:XB-GENE-956858 Length:500 Species:Xenopus tropicalis


Alignment Length:114 Identity:44/114 - (38%)
Similarity:63/114 - (55%) Gaps:10/114 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   504 CPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPG 568
            |.|.||.|.:.:..:||.|.|:||||:|:.|.::||.|.|:.|.:.::|:|||...|.:||  |.
 Frog   378 CNFSGCRKTYFKSSHLKAHLRTHTGEKPFSCNWEGCDKKFARSDELSRHRRTHTGEKKFAC--PV 440

  Fly   569 CTKRYTDPSSLRKHVKNH-------ALRNANGQLRRKSAGGASVPPSGP 610
            |.:|:.....|.||.:.|       |.:...|:|.|.| |...|..|||
 Frog   441 CDRRFMRSDHLTKHARRHMTTKKVPAWQAEVGKLNRIS-GTDKVQSSGP 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 33/80 (41%)
C2H2 Zn finger 504..526 CDD:275368 9/21 (43%)
C2H2 Zn finger 534..556 CDD:275368 8/21 (38%)
C2H2 Zn finger 564..586 CDD:275368 7/21 (33%)
klf11XP_012818552.1 KLF11_N 31..376 CDD:409242
PHA03247 <94..340 CDD:223021
COG5048 360..>431 CDD:227381 23/52 (44%)
C2H2 Zn finger 381..400 CDD:275368 7/18 (39%)
C2H2 Zn finger 408..430 CDD:275368 8/21 (38%)
zf-C2H2 436..458 CDD:395048 8/23 (35%)
C2H2 Zn finger 438..458 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.

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