DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lmd and Zxdb

DIOPT Version :9

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001074942.1 Gene:Zxdb / 668166 MGIID:3694898 Length:873 Species:Mus musculus


Alignment Length:779 Identity:165/779 - (21%)
Similarity:260/779 - (33%) Gaps:235/779 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 AAAENTGMPYQQGQYTQLNREDIFRFEPEDIARLT---------GESELPGMLQHPQTPYTPYTP 172
            |||.........|..|..|::.:.||| ..:..||         |.:..|    .||.|..|...
Mouse   199 AAAAAAAAAAFAGTITIHNQDLLLRFE-NGVLTLTTPPLPAWEPGVAPFP----QPQPPPQPGAL 258

  Fly   173 YTP------YTPCSAQNSQYAVQPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLG 231
            ..|      :.|.:|..:..|...|...   |......|.:..:....:.|.:|..:        
Mouse   259 IAPQAAAAGFPPAAAAAAAAAAAGAQLG---DCPELPPDLLLAEPAEPAACPAPPEE-------- 312

  Fly   232 EISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMC--ASNYEDYANLYQQGS 294
            |..|.|:::|.||          :..|.|...|.:        .:.:|  |...:.:|..:|...
Mouse   313 EAEAPAAAAAQSP----------RGPAGPGPGPGV--------VLYLCPEAQCGQTFAKKHQLKV 359

  Fly   295 GYSTENYHNNMAQVVEKPNREHKAI-----WTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLH 354
            ...|   |::     .:..|..|..     ||              |...:..::|||...:.  
Mouse   360 HLLT---HSS-----SQGQRPFKCPLSGCGWT--------------FTTSYKLKRHLQSHDKL-- 400

  Fly   355 QPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYN--------EEEDDLDNDVFAPPA 411
            :|.|  ...|.|              .:.|.::       ||        |:|:....:|.   .
Mouse   401 RPFG--CPVQGC--------------GKSFTTV-------YNLKAHMKGHEQENSFKCEVC---E 439

  Fly   412 ESDPKPD--STCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWL 474
            ||.|...  ||......|||.   |..|.::||.:.|....|...| .:.|  .|:.|.|:|.:.
Mouse   440 ESFPTQAKLSTHQRSHFEPER---PYQCAFSGCKKTFITVSALFSH-NRAH--FREQELFACSFP 498

  Fly   475 DCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGC 539
            .|.::|   :...:|.||:|.|:||:|..|.|.||...|:.:..|..|:|.|..:|.:.|..:||
Mouse   499 GCSKQY---DKACRLKIHLRSHTGERPFLCDFDGCGWNFTSMSKLLRHKRKHEDDRRFTCPVEGC 560

  Fly   540 LKAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGAS 604
            .|:|:.:.....|..||..|||:.|.:.||..|::..|||..|.|.|        |:...|..:.
Mouse   561 GKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKH--------LQDVGAWKSR 617

  Fly   605 VPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQRQHRSNSCSEALLLQQHQQQQQQQQ 669
            .|.....|...::...::.:.:|                      ::.|:.||         .|.
Mouse   618 CPVPTCNKLFTSKHSMKTHMTKR----------------------HNLSQDLL---------AQL 651

  Fly   670 QQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPAGPATLATATATTTA 734
            :......|.:|.|               |...::||...::...:...|....|.|.||..    
Mouse   652 EAANSLTPSSELT---------------SPGQSDLSGAELVSLFSDVPGHGSAAVLDTALV---- 697

  Fly   735 TATYGNGNMAPAPETEVLSVCSGGGSSNSNSNNNRYNANINQL----------SELEQLLTTAKP 789
                 |..:.......|.|..:|...:::||||:    ::.|.          |:|.|.|.|:..
Mouse   698 -----NSGILTIDVASVNSSLAGSLPADNNSNNH----SLGQAAEPRALRGAPSDLPQSLDTSLF 753

  Fly   790 TGTPAA------------SANGISLANNNGRANGDSKCHLSEFVSFEYVTKYLTDVYEPQCKSP 841
            .||..|            ||..:.|..:....|..                     .|||..:|
Mouse   754 FGTSVAGYQHSPLDMDDVSAGNVGLFGSLALKNSS---------------------LEPQALTP 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 zf-H2C2_2 489..515 CDD:290200 13/25 (52%)
C2H2 Zn finger 504..526 CDD:275368 8/21 (38%)
C2H2 Zn finger 534..556 CDD:275368 6/21 (29%)
C2H2 Zn finger 564..586 CDD:275368 9/21 (43%)
ZxdbNP_001074942.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..120
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 138..184
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..259 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..330 8/46 (17%)
Required for interaction with ZXDC. /evidence=ECO:0000250 340..646 91/394 (23%)
C2H2 Zn finger 342..364 CDD:275368 5/24 (21%)
zf-C2H2_aberr 373..518 CDD:293622 43/195 (22%)
C2H2 Zn finger 375..397 CDD:275368 6/35 (17%)
C2H2 Zn finger 405..427 CDD:275368 5/42 (12%)
zf-H2C2_2 419..442 CDD:290200 5/25 (20%)
C2H2 Zn finger 435..455 CDD:275368 6/22 (27%)
C2H2 Zn finger 464..486 CDD:275368 6/22 (27%)
C2H2 Zn finger 498..517 CDD:275368 6/21 (29%)
COG5048 <510..642 CDD:227381 44/161 (27%)
C2H2 Zn finger 525..547 CDD:275368 8/21 (38%)
C2H2 Zn finger 555..577 CDD:275368 6/21 (29%)
C2H2 Zn finger 585..607 CDD:275370 9/21 (43%)
Required for transcriptional activation. /evidence=ECO:0000250 645..776 33/167 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847750
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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