DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lmd and Zxdb

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001074942.1 Gene:Zxdb / 668166 MGIID:3694898 Length:873 Species:Mus musculus


Alignment Length:779 Identity:165/779 - (21%)
Similarity:260/779 - (33%) Gaps:235/779 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 AAAENTGMPYQQGQYTQLNREDIFRFEPEDIARLT---------GESELPGMLQHPQTPYTPYTP 172
            |||.........|..|..|::.:.||| ..:..||         |.:..|    .||.|..|...
Mouse   199 AAAAAAAAAAFAGTITIHNQDLLLRFE-NGVLTLTTPPLPAWEPGVAPFP----QPQPPPQPGAL 258

  Fly   173 YTP------YTPCSAQNSQYAVQPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLG 231
            ..|      :.|.:|..:..|...|...   |......|.:..:....:.|.:|..:        
Mouse   259 IAPQAAAAGFPPAAAAAAAAAAAGAQLG---DCPELPPDLLLAEPAEPAACPAPPEE-------- 312

  Fly   232 EISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMC--ASNYEDYANLYQQGS 294
            |..|.|:::|.||          :..|.|...|.:        .:.:|  |...:.:|..:|...
Mouse   313 EAEAPAAAAAQSP----------RGPAGPGPGPGV--------VLYLCPEAQCGQTFAKKHQLKV 359

  Fly   295 GYSTENYHNNMAQVVEKPNREHKAI-----WTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLH 354
            ...|   |::     .:..|..|..     ||              |...:..::|||...:.  
Mouse   360 HLLT---HSS-----SQGQRPFKCPLSGCGWT--------------FTTSYKLKRHLQSHDKL-- 400

  Fly   355 QPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYN--------EEEDDLDNDVFAPPA 411
            :|.|  ...|.|              .:.|.::       ||        |:|:....:|.   .
Mouse   401 RPFG--CPVQGC--------------GKSFTTV-------YNLKAHMKGHEQENSFKCEVC---E 439

  Fly   412 ESDPKPD--STCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWL 474
            ||.|...  ||......|||.   |..|.::||.:.|....|...| .:.|  .|:.|.|:|.:.
Mouse   440 ESFPTQAKLSTHQRSHFEPER---PYQCAFSGCKKTFITVSALFSH-NRAH--FREQELFACSFP 498

  Fly   475 DCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGC 539
            .|.::|   :...:|.||:|.|:||:|..|.|.||...|:.:..|..|:|.|..:|.:.|..:||
Mouse   499 GCSKQY---DKACRLKIHLRSHTGERPFLCDFDGCGWNFTSMSKLLRHKRKHEDDRRFTCPVEGC 560

  Fly   540 LKAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGAS 604
            .|:|:.:.....|..||..|||:.|.:.||..|::..|||..|.|.|        |:...|..:.
Mouse   561 GKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKH--------LQDVGAWKSR 617

  Fly   605 VPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQRQHRSNSCSEALLLQQHQQQQQQQQ 669
            .|.....|...::...::.:.:|                      ::.|:.||         .|.
Mouse   618 CPVPTCNKLFTSKHSMKTHMTKR----------------------HNLSQDLL---------AQL 651

  Fly   670 QQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPAGPATLATATATTTA 734
            :......|.:|.|               |...::||...::...:...|....|.|.||..    
Mouse   652 EAANSLTPSSELT---------------SPGQSDLSGAELVSLFSDVPGHGSAAVLDTALV---- 697

  Fly   735 TATYGNGNMAPAPETEVLSVCSGGGSSNSNSNNNRYNANINQL----------SELEQLLTTAKP 789
                 |..:.......|.|..:|...:::||||:    ::.|.          |:|.|.|.|:..
Mouse   698 -----NSGILTIDVASVNSSLAGSLPADNNSNNH----SLGQAAEPRALRGAPSDLPQSLDTSLF 753

  Fly   790 TGTPAA------------SANGISLANNNGRANGDSKCHLSEFVSFEYVTKYLTDVYEPQCKSP 841
            .||..|            ||..:.|..:....|..                     .|||..:|
Mouse   754 FGTSVAGYQHSPLDMDDVSAGNVGLFGSLALKNSS---------------------LEPQALTP 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 34/91 (37%)
C2H2 Zn finger 504..526 CDD:275368 8/21 (38%)
C2H2 Zn finger 534..556 CDD:275368 6/21 (29%)
C2H2 Zn finger 564..586 CDD:275368 9/21 (43%)
ZxdbNP_001074942.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..120
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 138..184
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..259 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..330 8/46 (17%)
COG5048 <339..547 CDD:227381 62/266 (23%)
Required for interaction with ZXDC. /evidence=ECO:0000250 340..646 91/394 (23%)
C2H2 Zn finger 342..364 CDD:275368 5/24 (21%)
C2H2 Zn finger 375..397 CDD:275368 6/35 (17%)
C2H2 Zn finger 405..427 CDD:275368 5/42 (12%)
C2H2 Zn finger 435..455 CDD:275368 6/22 (27%)
C2H2 Zn finger 464..486 CDD:275368 6/22 (27%)
C2H2 Zn finger 498..517 CDD:275368 6/21 (29%)
COG5048 <510..642 CDD:227381 44/161 (27%)
C2H2 Zn finger 525..547 CDD:275368 8/21 (38%)
C2H2 Zn finger 555..577 CDD:275368 6/21 (29%)
C2H2 Zn finger 585..607 CDD:275370 9/21 (43%)
Required for transcriptional activation. /evidence=ECO:0000250 645..776 33/167 (20%)
Blue background indicates that the domain is not in the aligned region.

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