DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lmd and ci

DIOPT Version :9

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_524617.3 Gene:ci / 43767 FlyBaseID:FBgn0004859 Length:1397 Species:Drosophila melanogaster


Alignment Length:697 Identity:188/697 - (26%)
Similarity:279/697 - (40%) Gaps:199/697 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 QPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAW-----LNFNLGEI----SAAASSSAASP 244
            :|...||...|           |:.::..|||:.|::     :.|:...:    :.:..|||||.
  Fly   201 RPPGGSIRASI-----------SRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASG 254

  Fly   245 KLGNVFE--------------EQVKEEASPAKLPSMNSTFGTPKCIPMCASNYEDYANLYQQGSG 295
            ..|::..              :|::.....|....:|..  ||:.:               ..||
  Fly   255 SYGHISATALNPMSHVHSTRLQQIQAHLLRASAGLLNPM--TPQQV---------------AASG 302

  Fly   296 YS-----------TENYHNNMA----QVVEKP------NREHKAIWTIDELDEL---------ML 330
            :|           ..:.|.|::    |:...|      ::...|.:::..||:.         ::
  Fly   303 FSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSLKNLDDAREKKGPFKDVV 367

  Fly   331 GEQQQFLQHHLQQQHLQEQQEQLHQPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENY 395
            .||.......:.|........||         :..|.:::||.::            ....|...
  Fly   368 PEQPSSTSGGVAQVEADSASSQL---------SDRCYNNVVNNIT------------GIPGDVKV 411

  Fly   396 NEEEDDLDN--DVFAPPAESD-PKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIE 457
            |...|:..|  .:..|..|.| ...|:|  |.:.|| .:.|...|.|..|..||..|...|:||.
  Fly   412 NSRLDEYINCGSISIPSNEYDCANADTT--DIKDEP-GDFIETNCHWRSCRIEFITQDELVKHIN 473

  Fly   458 KCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIH 522
            ..|:...| :.|.|.|.||.|..|||.|:|.|::|||.|:||||:||.|.||.||:|||||||.|
  Fly   474 NDHIQTNK-KAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTH 537

  Fly   523 QRSHTGERPYGCQYKGCLKAFSNSSDRAKHQ-RTHYDTKPYACQLPGCTKRYTDPSSLRKHVKN- 585
            .||||||:||.|:|.||.|||||:||||||| |||.:.|||.|:.||||||||||||||||||. 
  Fly   538 LRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTV 602

  Fly   586 HA-------------LRNANGQLRRKSAGGASVPPSGPKKAAKTRRH--------SESALVQRGV 629
            |.             |.:||.:|::.::                 ||        |........:
  Fly   603 HGAEFYANKKHKGLPLNDANSRLQQNNS-----------------RHNLQEHNIDSSPCSEDSHL 650

  Fly   630 GAGVGVAVPSAPGDQRQHRSN-------SCSEALLLQQHQQQQQQQQQQQKQHQP----ENERTT 683
            |..:|.:.||...:.....||       ..|::||                .:.|    ||....
  Fly   651 GKMLGTSSPSIKSESDISSSNHHLVNGVRASDSLL----------------TYSPDDLAENLNLD 699

  Fly   684 DRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPAGPATLATATATTTATATYGNGNMAPAPE 748
            |..||...|          ::::..:::....:.| .|.|:.:|...:..|...:..........
  Fly   700 DGWNCDDDV----------DVADLPIVLRAMVNIG-NGNASASTIGGSVLARQRFRGRLQTKGIN 753

  Fly   749 TEVLSVCSGGGSSNSNSNNNRYNANINQLSELEQLLTTAK-PTGTPA 794
            :..:.:|      |...:|..:.     :|||.|.:|..| ..||.|
  Fly   754 SSTIMLC------NIPESNRTFG-----ISELNQRITELKMEPGTDA 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 zf-H2C2_2 489..515 CDD:290200 16/25 (64%)
C2H2 Zn finger 504..526 CDD:275368 15/21 (71%)
C2H2 Zn finger 534..556 CDD:275368 17/22 (77%)
C2H2 Zn finger 564..586 CDD:275368 19/22 (86%)
ciNP_524617.3 zf-H2C2_2 503..530 CDD:290200 16/26 (62%)
C2H2 Zn finger 519..541 CDD:275368 15/21 (71%)
zf-H2C2_2 533..560 CDD:290200 19/26 (73%)
C2H2 Zn finger 549..572 CDD:275368 17/22 (77%)
C2H2 Zn finger 580..601 CDD:275368 18/20 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466594
Domainoid 1 1.000 48 1.000 Domainoid score I8021
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D56141at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R588
SonicParanoid 00.000 Not matched by this tool.
54.880

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