Protein Alignment lmd and ci

DIOPT Version :10

• Sequence 1: NP_732811.1
• Gene: lmd / 42717
• FlyBaseID: FBgn0039039
• Length: 866
• Species: Drosophila melanogaster
• Sequence 2: NP_524617.3
• Gene: ci / 43767
• FlyBaseID: FBgn0004859
• Length: 1397
• Species: Drosophila melanogaster
• Alignment Length: 697
• Identity: 188/697 - (26%)
• Similarity: 279/697 - (40%)
• Gaps: 199/697 - (28%)

  Fly   189 QPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAW-----LNFNLGEI----SAAASSSAASP 244
            :|...||...|           |:.::..|||:.|::     :.|:...:    :.:..|||||.
  Fly   201 RPPGGSIRASI-----------SRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRGSSAASG 254

  Fly   245 KLGNVFE--------------EQVKEEASPAKLPSMNSTFGTPKCIPMCASNYEDYANLYQQGSG 295
            ..|::..              :|::.....|....:|..  ||:.:               ..||
  Fly   255 SYGHISATALNPMSHVHSTRLQQIQAHLLRASAGLLNPM--TPQQV---------------AASG 302

  Fly   296 YS-----------TENYHNNMA----QVVEKP------NREHKAIWTIDELDEL---------ML 330
            :|           ..:.|.|::    |:...|      ::...|.:::..||:.         ::
  Fly   303 FSIGHMPTSASLRVNDVHPNLSDSHIQITTSPTVTKDVSQVPAAAFSLKNLDDAREKKGPFKDVV 367

  Fly   331 GEQQQFLQHHLQQQHLQEQQEQLHQPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENY 395
            .||.......:.|........||         :..|.:::||.::            ....|...
  Fly   368 PEQPSSTSGGVAQVEADSASSQL---------SDRCYNNVVNNIT------------GIPGDVKV 411

  Fly   396 NEEEDDLDN--DVFAPPAESD-PKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIE 457
            |...|:..|  .:..|..|.| ...|:|  |.:.|| .:.|...|.|..|..||..|...|:||.
  Fly   412 NSRLDEYINCGSISIPSNEYDCANADTT--DIKDEP-GDFIETNCHWRSCRIEFITQDELVKHIN 473

  Fly   458 KCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIH 522
            ..|:...| :.|.|.|.||.|..|||.|:|.|::|||.|:||||:||.|.||.||:|||||||.|
  Fly   474 NDHIQTNK-KAFVCRWEDCTRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCFKAYSRLENLKTH 537

  Fly   523 QRSHTGERPYGCQYKGCLKAFSNSSDRAKHQ-RTHYDTKPYACQLPGCTKRYTDPSSLRKHVKN- 585
            .||||||:||.|:|.||.|||||:||||||| |||.:.|||.|:.||||||||||||||||||.
  Fly   538 LRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTV 602

  Fly   586 HA-------------LRNANGQLRRKSAGGASVPPSGPKKAAKTRRH--------SESALVQRGV 629
            |.             |.:||.:|::.::                 ||        |........:
  Fly   603 HGAEFYANKKHKGLPLNDANSRLQQNNS-----------------RHNLQEHNIDSSPCSEDSHL 650

  Fly   630 GAGVGVAVPSAPGDQRQHRSN-------SCSEALLLQQHQQQQQQQQQQQKQHQP----ENERTT 683
            |..:|.:.||...:.....||       ..|::||                .:.|    ||....
  Fly   651 GKMLGTSSPSIKSESDISSSNHHLVNGVRASDSLL----------------TYSPDDLAENLNLD 699

  Fly   684 DRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPAGPATLATATATTTATATYGNGNMAPAPE 748
            |..||...|          ::::..:::....:.| .|.|:.:|...:..|...:..........
  Fly   700 DGWNCDDDV----------DVADLPIVLRAMVNIG-NGNASASTIGGSVLARQRFRGRLQTKGIN 753

  Fly   749 TEVLSVCSGGGSSNSNSNNNRYNANINQLSELEQLLTTAK-PTGTPA 794
            :..:.:|      |...:|..:.     :|||.|.:|..| ..||.|
  Fly   754 SSTIMLC------NIPESNRTFG-----ISELNQRITELKMEPGTDA 789

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lmd	NP_732811.1	SFP1	<493..585	CDD:227516	70/92 (76%)
		C2H2 Zn finger	504..526	CDD:275368	15/21 (71%)
		C2H2 Zn finger	534..556	CDD:275368	17/22 (77%)
		C2H2 Zn finger	564..586	CDD:275368	19/22 (86%)
ci	NP_524617.3	zf-H2C2_2	503..>521	CDD:463886	11/17 (65%)
		SFP1	<513..603	CDD:227516	68/89 (76%)
		C2H2 Zn finger	519..541	CDD:275368	15/21 (71%)
		zf-H2C2_2	533..560	CDD:463886	19/26 (73%)
		C2H2 Zn finger	549..572	CDD:275368	17/22 (77%)
		C2H2 Zn finger	580..601	CDD:275368	18/20 (90%)