DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lmd and phol

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_648317.1 Gene:phol / 39095 FlyBaseID:FBgn0035997 Length:669 Species:Drosophila melanogaster


Alignment Length:621 Identity:127/621 - (20%)
Similarity:196/621 - (31%) Gaps:202/621 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 ANITANNGEREMFRVPGAKVETNESYACGELQFPDFSHLCFAAETPNSVF----SDCHNYAGQDQ 105
            |||..::|  |.|       |..|.|....|.......:..|...|..:.    ||...:..:|.
  Fly    94 ANIVVDSG--EFF-------EHYEYYPVDRLDRLTSVTVATADALPPPIIMQQTSDDEEFIEEDG 149

  Fly   106 QQ-------DSDQDDIVCAAAENTGMPYQQGQYTQLNREDI--FRFEPEDIARLTGESELP-GML 160
            ||       |.|:||...|.|............|.:...:|  .:.|.:...:.|.:|... |.|
  Fly   150 QQMTSSCDGDGDEDDEATAPATTNAFEIASEMLTTIEATNIKEEQLESDFYMKATEDSNSSNGQL 214

  Fly   161 QHPQTPYTPYTPYTPYTPCSAQNSQYAVQPANDS-----------INLDIDYFN---YDEINCQS 211
            |                ......|....:|..:|           |.:..|.||   :..:|.:.
  Fly   215 Q----------------DFKLFGSSRVERPMGNSAAKRWKQTKVPIRITQDEFNVTLWSSLNSED 263

  Fly   212 KNQSP-------CSSPHLDAWLNFNLGEISAAASSSAASPKLGNVFEEQVKEEASPAKLPSMNST 269
            :::..       |:            |..|..:||:|             :.|.||:        
  Fly   264 EDEEEELEEPPGCA------------GTTSVTSSSAA-------------QNEGSPS-------- 295

  Fly   270 FGTPKCIPMCASNYEDYANLYQQGSGYSTENYHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQ 334
              .||.|   ...:....::...|.|        |...::..| ....|:..::|:....:|:  
  Fly   296 --MPKLI---IDEHMINHDVLSDGIG--------NEYVILPDP-FSASAVTDVEEVVNAFMGD-- 344

  Fly   335 QFLQHHLQQQHLQEQ----QEQLHQPHGQEQQTQNCKDDLVNYLSDEFIK--------------- 380
              ::.....|.|.||    :.||.:.:|..:..:|..:::      |.|:               
  Fly   345 --VKGEEDSQPLSEQLIYAENQLEEAYGNIELIENMPNNV------ELIQTPGPGPATVSVALSK 401

  Fly   381 --------------------AEEFRSLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDSTCCDPE 425
                                :...|...:.:.....:.:......|..|    :|.|........
  Fly   402 VNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVATP----NPPPPLVASSNP 462

  Fly   426 AEP------------------------------ENEVIPLICRWTGCDEEFPHQQAFVEHIEKCH 460
            |.|                              |:|.....|...||::||.:..|..:|:   |
  Fly   463 ARPQRPTIVTKLPTAVANQTAGNAMGAAGAAGEEDEEPKFRCTHRGCNKEFRNHSAMRKHM---H 524

  Fly   461 VDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRS 525
            ....:|.       .|....|.|....||..|..||:||||.:|.|.||.|.||...||:.|.|.
  Fly   525 THGPRGH-------VCNVCGKSFVESSKLKRHQLVHTGEKPFECTFEGCGKRFSLDFNLRTHVRI 582

  Fly   526 HTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKP 561
            |||:|||.|...||.|.|:.|::...|..||  |||
  Fly   583 HTGDRPYHCPIDGCSKCFAQSTNLKSHMLTH--TKP 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 35/69 (51%)
C2H2 Zn finger 504..526 CDD:275368 11/21 (52%)
C2H2 Zn finger 534..556 CDD:275368 7/21 (33%)
C2H2 Zn finger 564..586 CDD:275368
pholNP_648317.1 COG5048 <504..614 CDD:227381 47/121 (39%)
C2H2 Zn finger 504..526 CDD:275368 8/24 (33%)
C2H2 Zn finger 533..553 CDD:275368 6/19 (32%)
C2H2 Zn finger 561..583 CDD:275368 11/21 (52%)
C2H2 Zn finger 591..613 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.

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