DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and sug

DIOPT Version :9

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster


Alignment Length:331 Identity:118/331 - (35%)
Similarity:158/331 - (47%) Gaps:73/331 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 QHHLQQQHLQEQQEQLH-----------QP---HGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLD 388
            ||| ||||.|.||:..|           :|   :|..|:||:.           .:||       
  Fly    50 QHH-QQQHQQHQQQMQHIRFPTPPITPPRPIAGYGYRQRTQSV-----------IMKA------- 95

  Fly   389 SDDDENYNEEEDDLDNDVFAPPAESDPKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFV 453
                   ..::|:|.......|.:|.....|:.|...::       .:|.||.||..|....|..
  Fly    96 -------RGQQDELCRSPVEFPDDSKSCSSSSECGTASD-------FVCNWTDCDRVFDTLDALA 146

  Fly   454 EHIEKCHVDVRKGED-FSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLE 517
            :|:.:.|......:. :.|.|..|.|..:.||||||:|:|.|.|:.|||::|..  |.|:|||.|
  Fly   147 QHVTQRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL--CEKSFSRAE 209

  Fly   518 NLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKH 582
            |||||.|||:||:||.|.::||.||:||||||.||.|||...|||.|::.||.||||||||||||
  Fly   210 NLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGCQKRYTDPSSLRKH 274

  Fly   583 VK--NHALRNANGQLRRKSAGGASVPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQR 645
            ||  .|::...           ||.|.:.|.........||||.          ..:|:|...:.
  Fly   275 VKTFKHSIHLI-----------ASQPLTLPSVPCLLEASSESAF----------TCLPAASSVES 318

  Fly   646 QHRSNS 651
            ...|:|
  Fly   319 TSSSSS 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 zf-H2C2_2 489..515 CDD:290200 11/25 (44%)
C2H2 Zn finger 504..526 CDD:275368 13/21 (62%)
C2H2 Zn finger 534..556 CDD:275368 14/21 (67%)
C2H2 Zn finger 564..586 CDD:275368 17/23 (74%)
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 11/19 (58%)
zf-H2C2_2 183..207 CDD:290200 11/25 (44%)
COG5048 192..>271 CDD:227381 51/80 (64%)
C2H2 Zn finger 198..218 CDD:275368 13/21 (62%)
zf-H2C2_2 210..237 CDD:290200 17/26 (65%)
C2H2 Zn finger 226..248 CDD:275368 14/21 (67%)
C2H2 Zn finger 256..277 CDD:275368 16/20 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466593
Domainoid 1 1.000 48 1.000 Domainoid score I8021
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D56141at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19818
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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