Protein Alignment lmd and Zic5

DIOPT Version :9

• Sequence 1: NP_732811.1
• Gene: lmd / 42717
• FlyBaseID: FBgn0039039
• Length: 866
• Species: Drosophila melanogaster
• Sequence 2: NP_001382593.1
• Gene: Zic5 / 361095
• RGDID: 1310160
• Length: 623
• Species: Rattus norvegicus
• Alignment Length: 313
• Identity: 112/313 - (35%)
• Similarity: 140/313 - (44%)
• Gaps: 69/313 - (22%)

  Fly   408 APPAESDPKPDSTCCDPEAEPENEVIP-----------------LICRWTG-------------- 441
            |||....|.       |...|.:..:|                 |||:|..
  Rat   330 APPPAPPPA-------PAPHPHHPHLPGAAGAFLRYMRQPIKRELICKWLDPEELAGPPAPADSG 387

  Fly   442 ---CDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNK 503
               |.:.|......|.|:...||...:.....|||.||||..|||.|:|||:.|:|||:||||..
  Rat   388 AKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGKPFKAKYKLINHIRVHTGEKPFP 452

  Fly   504 CPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPG 568
            ||||||.|.|:|.||||||:|:||||:|:.|::.||.:.|:|||||.||...|...|||.|::.|
  Rat   453 CPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFDGCDRKFANSSDRKKHSHVHTSDKPYYCKIRG 517

  Fly   569 CTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGASVPPSGPKKAAKTRRHSESALVQRGVGAGV 633
            |.|.||.|||||||:|.|.          ||      ||..|           .||....||..|
  Rat   518 CDKSYTHPSSLRKHMKIHC----------KS------PPPSP-----------GALGYSSVGTPV 555

  Fly   634 GVAVPSAPGDQRQHRSNSCSEALLLQQHQQQQQQQQQQQKQHQPENERTTDRS 686
            |..: |...|..:.||::.|..:.........|........|.|.:..||..|
  Rat   556 GDTL-SPVLDPTRSRSSTLSPQVTNLNEWYVCQAGGAPSHLHTPSSNGTTSES 607

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lmd	NP_732811.1	zf-H2C2_2	489..515	CDD:290200	17/25 (68%)
		C2H2 Zn finger	504..526	CDD:275368	16/21 (76%)
		C2H2 Zn finger	534..556	CDD:275368	11/21 (52%)
		C2H2 Zn finger	564..586	CDD:275368	14/21 (67%)
Zic5	NP_001382593.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D268347at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920