DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and Klf12

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_063130396.1 Gene:Klf12 / 306110 RGDID:1309204 Length:571 Species:Rattus norvegicus


Alignment Length:64 Identity:16/64 - (25%)
Similarity:24/64 - (37%) Gaps:23/64 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 WTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPF-NARYKLLIHMRVHSGEKP 501
            |.||.|                    :|....|:| || |..||| .:.:::|..:.:...|.|
  Rat   428 WRGCGE--------------------RGTLLHCWW-DC-RLVKPFWKSVWRVLRKLDIELPEDP 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 2/9 (22%)
C2H2 Zn finger 504..526 CDD:275368
C2H2 Zn finger 534..556 CDD:275368
C2H2 Zn finger 564..586 CDD:275368
Klf12XP_063130396.1 None
Blue background indicates that the domain is not in the aligned region.

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