DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and Egr3

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_058782.1 Gene:Egr3 / 25148 RGDID:2545 Length:387 Species:Rattus norvegicus


Alignment Length:512 Identity:96/512 - (18%)
Similarity:159/512 - (31%) Gaps:214/512 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 YTQLNREDIFRFEPEDIARLTGESELPGMLQHPQTPYTPYTPYTPYTPCSAQNSQYAVQPANDSI 195
            |||:..|::.     ||. ||.|.      .:|:..|               :..:...|.|.::
  Rat    46 YTQMATENVM-----DIG-LTNEK------PNPELSY---------------SGSFQPAPGNKTV 83

  Fly   196 NLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGEISAA----------------ASSSAASP 244
            .. :..|.:|         ||.:      |...|:..:.:|                .::|...|
  Rat    84 TY-LGKFAFD---------SPSN------WCQDNIISLMSAGILGVPPASGALSTQTTTASMVQP 132

  Fly   245 KLGNVFEEQVKEEASPAKLPSMNS--------TFGTPKCIPMCASNYEDY--------ANLYQQG 293
            ..|:|      |...||..|..|.        :|..|:..|..|.:.:||        :||:...
  Rat   133 PQGDV------EAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMI 191

  Fly   294 SGYSTENYHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLHQPHG 358
            ..|:..::.|:|..:.|                                           |:|  
  Rat   192 PDYNLYHHPNDMGSIPE-------------------------------------------HKP-- 211

  Fly   359 QEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDSTCCD 423
                                     |:.:|                     |...:|.|.:....
  Rat   212 -------------------------FQGMD---------------------PIRVNPPPITPLET 230

  Fly   424 PEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYK 488
            .:|..:.::.|..       ...|.....::.|.                   ||:|.  |...|
  Rat   231 IKAFKDKQIHPGF-------GSLPQPPLTLKPIR-------------------PRKYP--NRPSK 267

  Fly   489 LLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQ 553
            ..:|      |:|:.||..||::.|||.:.|..|.|.|||.:|:.|:.  |:::||.|.....|.
  Rat   268 TPLH------ERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRI--CMRSFSRSDHLTTHI 324

  Fly   554 RTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGASVPPSGP 610
            |||...||:||:.  |.:::......::|.|.|..:..    ::...|||....|.|
  Rat   325 RTHTGEKPFACEF--CGRKFARSDERKRHAKIHLKQKE----KKSEKGGAPSASSAP 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 31/91 (34%)
C2H2 Zn finger 504..526 CDD:275368 10/21 (48%)
C2H2 Zn finger 534..556 CDD:275368 7/21 (33%)
C2H2 Zn finger 564..586 CDD:275368 4/21 (19%)
Egr3NP_058782.1 DUF3446 87..173 CDD:463400 20/106 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 241..283 14/75 (19%)
zf-C2H2 275..299 CDD:395048 10/23 (43%)
C2H2 Zn finger 277..299 CDD:275368 10/21 (48%)
COG5048 303..>375 CDD:227381 22/79 (28%)
C2H2 Zn finger 307..327 CDD:275368 7/21 (33%)
zf-H2C2_2 319..344 CDD:463886 9/26 (35%)
C2H2 Zn finger 335..355 CDD:275368 4/21 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..387 8/32 (25%)

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