DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and Gli3

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_032156.2 Gene:Gli3 / 14634 MGIID:95729 Length:1583 Species:Mus musculus


Alignment Length:759 Identity:207/759 - (27%)
Similarity:308/759 - (40%) Gaps:159/759 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 NREDIFRFEPEDIARLTGESELPGMLQHPQTPYTPYTPYTPYTPCSAQNSQYAVQPANDSINLDI 199
            :.|..:.::|..|..|...|.|.....:|..|:...:|:.  .|.:|..|.::  |.:..||..:
Mouse   141 HHEGRYHYDPSPIPPLHVPSALSSSPTYPDLPFIRISPHR--NPTAASESPFS--PPHPYINPYM 201

  Fly   200 DYF-------NYDEINCQSKNQSPCSSPHLDA-------WLNFNLGEISAAAS--SSAASPKLGN 248
            ||.       :...|:. ::..||..:||...       .:....|:.|..|.  .|||:...|.
Mouse   202 DYIRSLHSSPSLSMISA-ARGLSPTDAPHAGVSPAEYYHQMALLTGQRSPYADILPSAATAGAGA 265

  Fly   249 VFEEQVKEEASPAKLPSMNST-FGTPKCI-------PMCASNYEDYANLYQQGSGYSTENYHNNM 305
            :..|.         |.:|:|| |.:|:..       .:..|...|::...|.    ......|::
Mouse   266 IHMEY---------LHAMDSTRFPSPRLSARPSRKRTLSISPLSDHSFDLQT----MIRTSPNSL 317

  Fly   306 AQVVEKPNREHKAIWTIDELDELMLGEQQQF------LQHHLQQQHLQEQQE------------- 351
            ..::........|..:...|....:.....|      :..|:.||.|..||.             
Mouse   318 VTILNNSRSSSSASGSYGHLSASAISPALSFTYPSAPVSLHMHQQILSRQQSLGSAFGHSPPLIH 382

  Fly   352 ---------------------QLHQPHGQEQQTQNCKDDLVNYLSDEF------IKAEEFRSLDS 389
                                 |:.....:..|::...:..|:...|..      ||.:|    |.
Mouse   383 PAPTFPTQRPIPGIPTVLNPVQVSSGPSESSQSKPTSESAVSSTGDPMHNKRSKIKPDE----DL 443

  Fly   390 DDDENYNEEEDDLDNDVFAPPAESDPKPDSTCCDPEAEPENEVI-PLICRWTGCDEEFPHQQAFV 453
            ....:..::|......:....|:.|          |::.|.||| ...|.|.||..||..|...|
Mouse   444 PSPGSRGQQEQPEGTTLVKEEADKD----------ESKQEPEVIYETNCHWEGCTREFDTQDQLV 498

  Fly   454 EHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLEN 518
            .||...|:...| ::|.|.||||.|..|||.|:|.|::|||.|:||||:||.|.||.||:|||||
Mouse   499 HHINNDHIHGEK-KEFVCRWLDCSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCTKAYSRLEN 562

  Fly   519 LKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQ-RTHYDTKPYACQLPGCTKRYTDPSSLRKH 582
            ||.|.||||||:||.|:::||.|||||:||||||| |||.:.|||.|::||||||||||||||||
Mouse   563 LKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRKH 627

  Fly   583 VKNHALRNANGQLRRKSAGGASVPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQRQH 647
            ||  .:......:.:|..|.....|..|:.:..   ||:|        ...|.....|.|:|:: 
Mouse   628 VK--TVHGPEAHVTKKQRGDMHPRPPPPRDSGS---HSQS--------RSPGRPTQGAFGEQKE- 678

  Fly   648 RSNSCSEALLLQQHQQQQQQQQQQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVIIE 712
            .||:.|           ::::..|.|..:.|...|:..|..|....::..| ..:..||..:.:.
Mouse   679 LSNTTS-----------KREECLQVKTVKAEKPMTSQPSPGGQSSCSSQQS-PISNYSNSGLELP 731

  Fly   713 HNQSGGPAG-------PATLATATATTTATATYGNGNMAPAPETEVLSVCSGGGSSNSNSNNNRY 770
            ....|..|.       |...:|.:..|||.|.....|.|.....|.:.:                
Mouse   732 LTDGGSVADLSAIDETPIMDSTISTATTALALQARRNPAGTKWMEHIKL---------------- 780

  Fly   771 NANINQLSELEQLLTTAKPTGTPAAS---ANGISLANNNGRANG 811
             ..:.|::.:...|....|:..||.|   .|| :.:|||..:.|
Mouse   781 -ERLKQVNGMFPRLNPILPSKAPAVSPLIGNG-TQSNNNYSSGG 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516 69/92 (75%)
C2H2 Zn finger 504..526 CDD:275368 15/21 (71%)
C2H2 Zn finger 534..556 CDD:275368 16/22 (73%)
C2H2 Zn finger 564..586 CDD:275368 19/21 (90%)
Gli3NP_032156.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..78
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 368..475 14/120 (12%)
SFP1 <542..632 CDD:227516 67/91 (74%)
C2H2 Zn finger 548..570 CDD:275368 15/21 (71%)
C2H2 Zn finger 578..601 CDD:275368 16/22 (73%)
C2H2 Zn finger 609..630 CDD:275368 19/22 (86%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 620..728 33/133 (25%)
Mediates interaction with DZIP1. /evidence=ECO:0000269|PubMed:23955340 745..845 21/96 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 809..828 6/15 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 863..918
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1164..1189
Blue background indicates that the domain is not in the aligned region.

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