DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and LOC101883139

DIOPT Version :9

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_005163465.1 Gene:LOC101883139 / 101883139 -ID:- Length:600 Species:Danio rerio


Alignment Length:676 Identity:220/676 - (32%)
Similarity:303/676 - (44%) Gaps:179/676 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 CSAQNSQYAVQPANDSINL-------DIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGEISAA 236
            ||...|..::  |.|.::|       .:.|.:      ..|..|.|:..|....|:.:|..:|.:
Zfish    52 CSLSESPASI--ATDDLDLVCSTERAILSYIS------GIKTDSSCNFSHTGDTLSPSLFSLSPS 108

  Fly   237 ASS-SAASPKLGNVFEEQVKEEASPAKL--PSMNSTFGTPKCIPMCASNYEDYANLYQQGSGYST 298
            .|| ||.||...:..........|...|  ||:::..|.|:                      :.
Zfish   109 PSSFSAFSPSFSSPSSSHSSGSMSELCLTSPSLSALCGPPE----------------------TQ 151

  Fly   299 ENYHNNMAQVVEKPNREH---KAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLHQPHGQE 360
            |..::..||    |..:|   |:            .:|:...:.||..:.|.:::|..      :
Zfish   152 ELLYSCTAQ----PPEQHLYPKS------------PKQEPTAEFHLCSKKLLDKEELF------Q 194

  Fly   361 QQTQNCKDDLVNYLSDEFIKAEEFR-SLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDSTCCDP 424
            .::.:||:.| |:  ..|...|:|: ||.....|..|....                        
Zfish   195 YRSSDCKEHL-NF--HHFQTKEQFKNSLALSGVEGMNGHLS------------------------ 232

  Fly   425 EAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYKL 489
            |.:|        |:|..|...:..::..|.||||.|:|.||||:|:|||..|.||:|||||||||
Zfish   233 EQQP--------CKWMDCRATYGQREELVRHIEKIHIDQRKGEEFTCFWAGCVRRHKPFNARYKL 289

  Fly   490 LIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQR 554
            |||||||||||||||.|.|||||||||||||||.||||||:||.||:.|||||||||||||||||
Zfish   290 LIHMRVHSGEKPNKCMFEGCNKAFSRLENLKIHLRSHTGEKPYICQHPGCLKAFSNSSDRAKHQR 354

  Fly   555 THYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSAGGASVPPSGPKKAAKTRRH 619
            ||.|||||||||||||||||||||||||||.|:.:....|                   .|.:.|
Zfish   355 THLDTKPYACQLPGCTKRYTDPSSLRKHVKVHSSKALQAQ-------------------DKVQLH 400

  Fly   620 S--ESALV--QRGVGAGVGVAVPSAPGDQRQHRSNSCSEALLLQQHQQQQQQQQQQQKQHQPENE 680
            |  |..:|  |...|:...|..|       :||   |..:|        .:..|.....:..|:|
Zfish   401 SPVEQDVVDLQHLQGSSPSVCSP-------EHR---CPISL--------TEIHQDGFSVYSEEDE 447

  Fly   681 RTTDRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPAGPATLATATATTTATATYGNGNMAP 745
                  :|...: :.::|::..:||....|..||:         |...|..:......|. |:| 
Zfish   448 ------SCSRAL-SGSSSVSLEQLSRHSSISLHNR---------LHNNTINSQPRLVCGI-NLA- 494

  Fly   746 APETEVLSVCSGGGS-SNSNSNNNRYNA-----NINQ--LSELEQL-------LTTAKPTGTPAA 795
            :...||.||.....| .||:.|.|::|.     |:.|  .:.:||:       :.:.:..|.|.|
Zfish   495 SGTNEVQSVSEIHSSFLNSHQNLNQFNEVPINHNVFQATFNHVEQISNDGRDDMQSFEQNGFPLA 559

  Fly   796 --SANGISLANN--NGRANGDSKCHL 817
              .::|.|...|  ..:.|..:.|.|
Zfish   560 CVRSSGFSQTQNMQMRKGNRPANCPL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 zf-H2C2_2 489..515 CDD:290200 23/25 (92%)
C2H2 Zn finger 504..526 CDD:275368 18/21 (86%)
C2H2 Zn finger 534..556 CDD:275368 19/21 (90%)
C2H2 Zn finger 564..586 CDD:275368 21/21 (100%)
LOC101883139XP_005163465.1 C2H2 Zn finger 241..260 CDD:275368 6/18 (33%)
SFP1 <293..387 CDD:227516 84/93 (90%)
C2H2 Zn finger 307..326 CDD:275368 16/18 (89%)
C2H2 Zn finger 334..356 CDD:275368 19/21 (90%)
C2H2 Zn finger 364..386 CDD:275368 21/21 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9595
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006952
OrthoInspector 1 1.000 - - otm26165
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.000

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