DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmd and gli1

DIOPT Version :10

Sequence 1:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_002939471.1 Gene:gli1 / 100494064 XenbaseID:XB-GENE-482644 Length:1371 Species:Xenopus tropicalis


Alignment Length:112 Identity:23/112 - (20%)
Similarity:40/112 - (35%) Gaps:25/112 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ILGYSTGIWRLINDYFRREFQS---YLEVEAQTNQYLLR-------------DPPKAVLAPDAPD 63
            :||....|:||     .|::|:   .:|...:..||:|.             |........|...
 Frog     9 VLGLYRSIFRL-----ARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCIDECT 68

  Fly    64 KQLPVGGRQLVRSPATTPPPP----PLDGSHQQVTDSIMALFEPITL 106
            .::.:|....:..|.....||    ||.|...:..:.:..|.:|:.|
 Frog    69 ARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYL 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmdNP_732811.1 SFP1 <493..585 CDD:227516
C2H2 Zn finger 504..526 CDD:275368
C2H2 Zn finger 534..556 CDD:275368
C2H2 Zn finger 564..586 CDD:275368
gli1XP_002939471.1 SFP1 <312..402 CDD:227516
C2H2 Zn finger 318..340 CDD:275368
C2H2 Zn finger 348..371 CDD:275368
C2H2 Zn finger 379..400 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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