DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6688 and Lnx1

DIOPT Version :9

Sequence 1:NP_651110.1 Gene:CG6688 / 42716 FlyBaseID:FBgn0039038 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001101828.1 Gene:Lnx1 / 360926 RGDID:1308159 Length:728 Species:Rattus norvegicus


Alignment Length:242 Identity:55/242 - (22%)
Similarity:78/242 - (32%) Gaps:105/242 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 KDCDTNSICCAPMPTSLRRLSLVLESILRLVECPVCGVTISPPAMQCQNGHLLCVDC----RIRS 172
            :|.|.:.:|           .:.|:::|..::.|            |  ||..|..|    .:..
  Rat    37 EDVDDDLVC-----------HICLQALLDPLDTP------------C--GHTYCTLCLTNFLVEK 76

  Fly   173 ERCPVCRDFYTPRRALLAEQIFLTIANAFEMCRSENKLRQKL---------FAGITRPVVGR--- 225
            :.|||.|           :.:.|      :.|:..|.|..||         |......|:.|   
  Rat    77 DFCPVDR-----------KPVVL------QHCKKSNILVNKLLNKLLVNCPFTEHCSEVLQRCNL 124

  Fly   226 ----QDRITGQDTW-----RKRR-----PVLPTNKFLTKLLEGCAYST-DNLSPSNAATLLRTNT 275
                |....|...:     ||||     |            :|||..| ..|||..:|....:..
  Rat   125 QYHFQTSCKGASHYGLTKDRKRRSQDGCP------------DGCASLTATTLSPEVSAAATISLM 177

  Fly   276 TDVAGDSSEIPARTS------PVT------------ATPPERTTMHA 304
            ||..|  .:.||.||      |||            |.|.||:||.:
  Rat   178 TDEPG--LDNPAYTSSVEDGEPVTNPSDTGRSNRTRARPFERSTMRS 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6688NP_651110.1 PDZ_signaling 24..104 CDD:238492
Lnx1NP_001101828.1 RING 45..81 CDD:214546 10/60 (17%)
DegQ <260..364 CDD:223343
PDZ_signaling 276..360 CDD:238492
PDZ_signaling 384..464 CDD:238492
PDZ_signaling 506..589 CDD:238492
PDZ_signaling 637..721 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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