DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6688 and Grid2ip

DIOPT Version :9

Sequence 1:NP_651110.1 Gene:CG6688 / 42716 FlyBaseID:FBgn0039038 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001152793.1 Gene:Grid2ip / 170935 MGIID:2176213 Length:1203 Species:Mus musculus


Alignment Length:436 Identity:98/436 - (22%)
Similarity:145/436 - (33%) Gaps:123/436 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 STSNEDGQHGDGSSVRLLRIPRAAPAMENYGFQLTRSKWDPYPWVCEVAAGTPAALCGLKPGDCV 74
            :||...|:.|.|...|.:|:.:.     |..|..|.....|. |:..|..|:||....||.||.:
Mouse   252 ATSLLGGRTGPGGPRRTVRVYKG-----NKSFGFTLRGHGPV-WIESVLPGSPAENASLKSGDRI 310

  Fly    75 LEVNGNDVLGLRVSEIAKMVKSQKDCVTILCWNSECDKDCDTNSI---CCAPMPTSLRRLSLVLE 136
            |.:||.|:......::..|::......|::..........|::|:   ..|...|||:.::.:|.
Mouse   311 LFLNGLDMRNCSHDKVVSMLQGSGAMPTLVVEEGPVPFASDSDSLDSPTRASALTSLQWVADILP 375

  Fly   137 SILRLVECPVCGVTISPPAMQCQNGHLLCVDCRIRSERCPVCRDFYTPRRALLAEQIFLTIANAF 201
            |.:|     |.|.|.|.     |..|||     ...||..|||..   .|......|...|.:.:
Mouse   376 SSIR-----VQGRTFSQ-----QLDHLL-----TPPERYGVCRAL---ERFFQHRNIDTLIVDVY 422

  Fly   202 EMCRSENKLRQKLFAGITRPVVGRQDRITGQDTWRKRRPVLPTNKFLTKLLEGCAYSTDNLSPSN 266
                               ||:   |....|..|          :||.:||   .|....|....
Mouse   423 -------------------PVL---DTPAKQVLW----------QFLYQLL---TYEEQELCQEK 452

  Fly   267 AATLL-RTNTTDVAGDSSEIPARTSPVTATPPERTTMHATLDANAAHPSLSTNDLQQEGVK---- 326
            .|..| .|..|:........|..|...|..|..|:::.|:        |:....|:.:|::    
Mouse   453 IACFLGYTAMTEPESSLDLEPESTPEPTPEPQPRSSLRAS--------SMCRRSLRSQGLETSLS 509

  Fly   327 -----------PNAEGVDEESGTNSSHISATSLHGPPLP-------ASVSPGINES-----SGLQ 368
                       |...| :.::|      ..|||...|.|       |.:...:|.|     ..:.
Mouse   510 CGPGDCPEMPLPLIPG-ERQAG------DGTSLPETPNPKMMSAVYAELESRLNSSFKGKIGTMS 567

  Fly   369 PVRIPPVTPSQDLPQQVVQTK----------PASLLYRCPCKLQDP 404
            ..|..|..||      :|.|.          |:..|...||  .||
Mouse   568 KSRASPPVPS------LVGTSGPRTLSGVSWPSDRLLPSPC--YDP 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6688NP_651110.1 PDZ_signaling 24..104 CDD:238492 21/79 (27%)
Grid2ipNP_001152793.1 PDZ_signaling 9..69 CDD:238492
HN_L-delphilin-R1_like 122..201 CDD:259820
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 215..270 6/17 (35%)
PDZ_signaling 269..342 CDD:238492 20/78 (26%)
HN_L-delphilin-R2_like 378..457 CDD:259821 29/131 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 466..541 16/89 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..586 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 611..656
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 710..821
FH2 812..1180 CDD:280362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.