DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6688 and Pdzd3

DIOPT Version :9

Sequence 1:NP_651110.1 Gene:CG6688 / 42716 FlyBaseID:FBgn0039038 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:114 Identity:31/114 - (27%)
Similarity:44/114 - (38%) Gaps:35/114 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LRIPRAAP------------------AMENYGFQLTRSK----------WDPYPWVCEVAAGTPA 63
            |.:|.|||                  ..|.:||.|...|          ||..|       |.||
Mouse   243 LGMPLAAPLAEGWALPAKPRCLNIEKGPEGFGFLLREEKGLDGRLGQFLWDVDP-------GLPA 300

  Fly    64 ALCGLKPGDCVLEVNGNDVLGLRVSEIAKMVKSQKDCVTILCWNSECDK 112
            ...|:|.||.::.|.|..|.||...|....:::|..||:::..:.|.|:
Mouse   301 DKAGMKAGDRLVAVAGESVDGLGHEETVSRIRAQGSCVSLIVVDPEADR 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6688NP_651110.1 PDZ_signaling 24..104 CDD:238492 29/104 (28%)
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492
PDZ_signaling 155..232 CDD:238492
PDZ 260..345 CDD:214570 24/91 (26%)
PDZ_signaling 407..471 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14191
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.