DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klg and ncam3

DIOPT Version :9

Sequence 1:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_017207042.1 Gene:ncam3 / 566122 ZFINID:ZDB-GENE-131127-340 Length:688 Species:Danio rerio


Alignment Length:491 Identity:116/491 - (23%)
Similarity:188/491 - (38%) Gaps:99/491 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SGGFAVEAAISNRGSNSRSMSNVQQSAVAASTLTATLPRFLSRGHTYRAVVGDTLVLPCQVENLG 128
            :|.:..|...|| |:...:.|.:..........|.|...||         |..|.::||.|....
Zfish    82 TGRYTCEFEDSN-GNKKTTNSQIYVYKTPDFGQTRTFHEFL---------VNQTAIIPCMVTGKP 136

  Fly   129 NFVLLWRRGTNVLTASNIMVTRDER--VRLIDGYNLEISDLEPQDAGDYVCQISDK---INRDQV 188
            ...:.|.|       ::.|:..|.|  ::::....|.|..::.:|.|.|:|:...|   |.|:..
Zfish   137 EVEIHWFR-------NDRMIHDDGRSHLKILPDRTLMIVGIQHEDRGTYICEGKIKGRPITRNLP 194

  Fly   189 HTVEILVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIG-DGPILT 252
            .:|.:..||:|........:.|.....:::.|...|.|||:|.||..|..|....... |...||
Zfish   195 ISV
VVNEPPTVLIHEEKKSVFAGPNTSLSIACLVKGAPVPTITWTTPSSFNDYRYSYNTDKSELT 259

  Fly   253 LEKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCIVFADPVA 317
            :..:.|...|.|.|||.|.:|:...:.: |||...|.:...::.:....|..|.:.|.....|..
Zfish   260 ISAVTRSDYGEYICTASNKIGESSAIFV-LDV
SELPTVVFTENKLSIIPGESASVFCNATGHPAP 323

  Fly   318 TVSWYQNSFPIQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELSGRPGAA 382
            .|.|.:     :.|.:::    :....|.:.:|...|.|.|||:|.|.:|.:....:|...|...
Zfish   324 AVQWVR-----KDTQQKM----SGEPELILENIMPSDGGFYSCIATNIVGTTTGDFQLITWPETP 379

  Fly   383 EFYSPKWGR---------------SPDSYN-LTWKIDSYPPLEEVRLLYRRVQMNETYQQPGRWH 431
            ..:|...|.               ||.||. |.||    .|.|:                  .|:
Zfish   380 SQFSMSAGSSSAILIHSVSVQDGGSPISYYILQWK----KPSED------------------NWN 422

  Fly   432 DFILTPEHRPASEPLTHIMSYTIKNLHPGGYYEAIVQAKNRY---GWNEVSDIFQFVVATNSQDI 493
            ..|:.|.:     ||      .||:|.|...|...:.|||.:   .::...:||     |.|:. 
Zfish   423 QNIVKPAY-----PL------MIKDLEPYTEYSVRIAAKNSHYQGNFSTEQNIF-----TQSRH- 470

  Fly   494 GPEDAEVVASSKSRSNSASIGSLP-------GSTVL 522
            |..|:.|::.|:.:....|: |:|       ||.:|
Zfish   471 GEPDSPVLSLSEKKLEKNSV-SIPIKQLKDGGSPIL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klgNP_524454.2 DUF1370 63..>124 CDD:284518 14/59 (24%)
IG_like 109..195 CDD:214653 20/90 (22%)
Ig 118..191 CDD:143165 17/77 (22%)
IG_like 205..274 CDD:214653 21/69 (30%)
IGc2 213..273 CDD:197706 20/60 (33%)
IGc2 301..367 CDD:197706 16/65 (25%)
FN3 392..486 CDD:238020 24/97 (25%)
ncam3XP_017207042.1 I-set 18..99 CDD:254352 5/17 (29%)
IGc2 31..94 CDD:197706 4/12 (33%)
IG_like 122..197 CDD:214653 19/81 (23%)
IGc2 123..182 CDD:197706 15/65 (23%)
Ig 202..290 CDD:299845 26/88 (30%)
I-set 212..290 CDD:254352 23/78 (29%)
IGc2 307..364 CDD:197706 16/65 (25%)
FN3 376..466 CDD:238020 27/127 (21%)
fn3 <499..558 CDD:278470 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45080
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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