DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klg and robo4

DIOPT Version :9

Sequence 1:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:517 Identity:109/517 - (21%)
Similarity:180/517 - (34%) Gaps:103/517 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LLHAHAGSGGFAVEAAISNRGSNSRSMSNVQQSAVAASTLTATLPRFLSRGHTYRAVVGDTLVLP 121
            |:|..|.....|      :|...||.:|.:            .|||.:.........||....|.
Zfish    45 LMHQRASHRDRA------HRRKGSRLVSEI------------NLPRIVHHPSDVVVRVGSPATLS 91

  Fly   122 CQVENLGNFVLLWRRGTNVLTASNIMVTRDERVRLIDGYNLEISDLEPQDAGD-----YVC---- 177
            |:.|......:.|.|....|.... |..:.:.:.|.|| :|....:.|...|.     |.|    
Zfish    92 CRAEGNPEPTIQWLRNGQPLDTDK-MDAQSQPIVLPDG-SLFFFSVVPGRKGQSHEAVYACIAHN 154

  Fly   178 QISDKINRD-QVHTV----EILVPPSVRAIPTSGQLQARKGGPITLECKGS-GNPVPSIYWTKKS 236
            .|.:..:|: .:|..    :..|.||        .::...|...|:.|... |:|.|::.| :|.
Zfish   155 SIGNATSRNASLHIAALREDFRVQPS--------DVEVAIGEMATINCSPPVGHPEPNVTW-RKD 210

  Fly   237 G--ANKSTARIGD--GPILTLEKLERQQAGVYQCTADNGVGDPVTVDMRLDVL-------YPPDI 290
            |  .|.|.....:  |.:: :...::..:|||.|.|.|.:|...:...||.||       .|.|:
Zfish   211 GILINSSNEHYTELKGKLI-IAPAQKNDSGVYSCIASNMIGVRESRAARLSVLAKPVLLRKPEDV 274

  Fly   291 QVEKSWIHSGEGFEAKLVCIVFADPVATVSWYQNSFPIQSTDRRIMATRANRHMLTIRHIQQEDF 355
            .|:.       |..|:..|....||:.::.|.:...|:.:....|...    |.|.|.::..:|.
Zfish   275 SVQL-------GESAQFFCEADGDPMPSIEWSREQGPLPNGRYLINPD----HSLQIHYVTAQDM 328

  Fly   356 GNYSCVADNSLGRS----RKYMELSGRPGAAEFYSPKWGRSPDSYNLT------------WKIDS 404
            |.|||..:|.||.|    :..:|.:|.....:.:...........|:|            ||:.|
Zfish   329 GRYSCTVENKLGVSVASAQLLVEDAGGTRLRDLHKELSALRVSLENVTVMSTASNMSQVMWKLQS 393

  Fly   405 YPP----LEEVRLLYRRVQMNETYQQPGRWHDFILTPEHRPASEPLTHIMSYTIKNLHPGGYYEA 465
            :..    ||...:|||.:     ......|     |.:..|.....||     :..|..|..||.
Zfish   394 FGSQPHYLEGFEVLYRSL-----LPASSDW-----TAQRVPQPSLHTH-----VGPLKRGYKYEF 443

  Fly   466 IVQAKNRYGWNEVSDIFQFVVATNSQDIGPEDAEVVASSKSRSNSASIGSLPGSTVLHTALL 527
            .|:......:...|:.....|........|:|..:...:: |:::..:...|.....|..::
Zfish   444 KVRPYGSSLYGRESNTRHLRVPEIVPSAAPQDVSITMPAE-RNDTVHLSWEPPPHDAHNGII 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klgNP_524454.2 DUF1370 63..>124 CDD:284518 12/60 (20%)
IG_like 109..195 CDD:214653 20/99 (20%)
Ig 118..191 CDD:143165 18/82 (22%)
IG_like 205..274 CDD:214653 18/73 (25%)
IGc2 213..273 CDD:197706 18/64 (28%)
IGc2 301..367 CDD:197706 17/65 (26%)
FN3 392..486 CDD:238020 21/109 (19%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 23/100 (23%)
I-set 71..168 CDD:254352 21/98 (21%)
I-set 175..261 CDD:254352 24/95 (25%)
Ig2_Robo 177..261 CDD:143201 24/93 (26%)
I-set 265..350 CDD:254352 23/95 (24%)
Ig 282..350 CDD:299845 19/71 (27%)
FN3 373..448 CDD:214495 20/89 (22%)
FN3 472..560 CDD:238020 5/34 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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