DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klg and dscamb

DIOPT Version :9

Sequence 1:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:505 Identity:115/505 - (22%)
Similarity:190/505 - (37%) Gaps:126/505 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 EAAISNRGSNSRSMSNVQQSAVAAST----------------LTATLPRFLSRGHTYRAVVGDTL 118
            :.|..|.|  :..:||||.|.....|                :|..:|..:....:..|.:|..:
Zfish   550 QRAFENNG--TLKLSNVQNSDEGEYTCYVLVDPEKQIHRSVHVTVKVPPLIQHSDSQSASIGQRV 612

  Fly   119 VLPCQVENLGN--FVLLWRRGTNVLTASNIMVTRDERVRLID-GYNLEISDLEPQDAGDYVCQIS 180
            .:||.|.: |:  ..:.|.:....:.|| :.||.|.    || ..:|.||:|.....|.|.|   
Zfish   613 FIPCVVIS-GDLPMSITWHKDGRPINAS-LGVTIDN----IDFTSSLRISNLSEIHNGSYTC--- 668

  Fly   181 DKINRDQV----HTVEILVPPSVRAIPTSGQLQARK-----GGPITLECKGSGNPVPSIYWTKKS 236
              |.|::.    |:::::|     .:|...::|.:.     |..:||.|...|||:|:|.|....
Zfish   669 --IARNEAAAVEHSIQLIV
-----KVPPHFEVQPKDQDGIYGKSVTLNCSAKGNPIPTIVWNHSK 726

  Fly   237 GAN---------KSTARI---GDGPILTLEKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPD 289
            ||.         .|.:|:   .:|.:|....|| :.||.|.|...|.||..::..|.|.|..|..
Zfish   727 GAGVPQFQPIALNSGSRVQLLENGSLLIKHVLE-EDAGFYLCKVSNDVGADISKSMYLTVKIPAM 790

  Fly   290 IQVEKSWIHSGEGFEAKLVCIVFADPVATVSWYQNSFPIQSTDRRIMATRANRHMLTIR------ 348
            |....:...:.:|...::.|....:....|.|.:.|        .|:....:|:::|::      
Zfish   791 ITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEKES--------HIINPDMSRYVVTVKEVGDEV 847

  Fly   349 -------HIQQEDFGNYSCVADNSLGRSRKYMEL--SGRPGAAEF---------YSPKW-----G 390
                   |..:||.|.:||:|.||.|..:..::|  ..||...|.         .:.:|     |
Zfish   848 ISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQDRPDPPEVEIREVKDRTIALRWTMGFDG 912

  Fly   391 RSP-DSYNLTWKIDSYPPLEEVRLLYRRVQMNETYQQPGRWHDFILTPEHRPASEPLTHIMSYTI 454
            .|| ..|::.:|                       .:...|....:|.:..|      .:...||
Zfish   913 NSPITGYDINYK-----------------------NKSASWASSQMTKDVSP------QLNQATI 948

  Fly   455 KNLHPGGYYEAIVQAKNRYGWNEVSDIFQFVVATNSQDIGPEDAEVVASS 504
            ..|||...|...:.|||:.|.:..|:...........|..|:|.::.|.|
Zfish   949 IELHPASTYNIRMFAKNQIGESRPSNELTITTDEAPPDGAPQDVQLEAIS 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klgNP_524454.2 DUF1370 63..>124 CDD:284518 15/69 (22%)
IG_like 109..195 CDD:214653 24/92 (26%)
Ig 118..191 CDD:143165 22/79 (28%)
IG_like 205..274 CDD:214653 25/85 (29%)
IGc2 213..273 CDD:197706 23/71 (32%)
IGc2 301..367 CDD:197706 17/78 (22%)
FN3 392..486 CDD:238020 18/94 (19%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653
Ig 424..498 CDD:143165
IG_like 511..592 CDD:214653 9/43 (21%)
IGc2 518..576 CDD:197706 9/27 (33%)
I-set 595..685 CDD:254352 25/100 (25%)
Ig 612..682 CDD:143165 22/80 (28%)
I-set 689..785 CDD:254352 28/96 (29%)
Ig7_DSCAM 706..785 CDD:143211 26/79 (33%)
IG_like 795..883 CDD:214653 19/95 (20%)
Ig 803..890 CDD:299845 21/94 (22%)
FN3 887..980 CDD:238020 22/121 (18%)
FN3 987..1084 CDD:238020 4/12 (33%)
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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