DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klg and Dscam1

DIOPT Version :9

Sequence 1:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:599 Identity:113/599 - (18%)
Similarity:208/599 - (34%) Gaps:167/599 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNIISRSIRTGALAPPI------TAHASANANASGLRKSSQRRNRA-----PLQMNCPILIVISL 54
            :||.|.....|.|...|      .|..||..|..||....|...:|     .|.:.||:      
  Fly   495 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV------ 553

  Fly    55 GWLLHAHAGSGGFAVEAAISNRGSNSRSMS--------------NVQQSAVAAS-TLTA------ 98
                      .|:.:::.:..|.:.:..::              ||::::..|: |..|      
  Fly   554 ----------AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 608

  Fly    99 -----------TLPRFLSRGHTYRAVVGDTLVLPCQVENLGNFVLL-W----------------R 135
                       .||:.:...:.....:||::.|.||::.....:.: |                :
  Fly   609 SARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQPQ 673

  Fly   136 RGTNVLTASNIMVTRDERVRLIDGYNLEISDLEPQDAGDYVCQISDKINRDQVHTVEIL--VPPS 198
            ..||.::....|::              |....|...|...|..|:|.. ...::|::.  |||.
  Fly   674 MRTNRISEKTSMIS--------------IPSASPAHTGRDTCIASNKAG-TTTYSVDLTVNVPPR 723

  Fly   199 VRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSG---------ANKSTARIGDGPILTLE 254
            ....||....  .:|....:|||..|.|.|.:.|.|..|         ......|:.:| .|.::
  Fly   724 WILEPTDKAF--AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG-TLHVD 785

  Fly   255 KLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCIVFADPVATV 319
            .:::...|.|.|.|.||:|..::..:.:.|..||:...:.....:..|..|.|.|....:....:
  Fly   786 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGI 850

  Fly   320 SWYQNSFPIQ-STDRR------IMATRANRHMLTIRHIQQEDFGNYSCVADNSLGR--------- 368
            .|..|:..:. ..|.|      |::|.. ...|:|:..::.|...::|||.|:.|.         
  Fly   851 LWNMNNMRLDPKNDNRYTIREEILSTGV-MSSLSIKRTERSDSALFTCVATNAFGSDDASINMIV 914

  Fly   369 --------SRKYMELSGRPGAAEFYSPKWGRSPDSYNLTW--KIDSYPPLEEVRLLYRRVQMNET 423
                    :.|.::.|||                |..|:|  ..|...||:...:.::|.:.:  
  Fly   915 QEVPEMPYALKVLDKSGR----------------SVQLSWAQPYDGNSPLDRYIIEFKRSRAS-- 961

  Fly   424 YQQPGRWH--DFILTPEHRPASEPLTHIMSYTIKNLHPGGYYEAIVQAKNRYGWNEVSDIFQFVV 486
                  |.  |.::.|.|...::         ::.|.|...|...:.|:|..|.::.|:....:.
  Fly   962 ------WSEIDRVIVPGHTTEAQ---------VQKLSPATTYNIRIVAENAIGTSQSSEAVTIIT 1011

  Fly   487 ATNSQDIGPEDAEV 500
            |..:....|::.:|
  Fly  1012 AEEAPSGKPQNIKV 1025

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klgNP_524454.2 DUF1370 63..>124 CDD:284518 13/92 (14%)
IG_like 109..195 CDD:214653 16/104 (15%)
Ig 118..191 CDD:143165 13/89 (15%)
IG_like 205..274 CDD:214653 19/77 (25%)
IGc2 213..273 CDD:197706 19/68 (28%)
IGc2 301..367 CDD:197706 17/72 (24%)
FN3 392..486 CDD:238020 18/97 (19%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352 9/31 (29%)
IGc2 446..517 CDD:197706 6/21 (29%)
I-set 533..618 CDD:254352 12/100 (12%)
IGc2 544..607 CDD:197706 10/78 (13%)
Ig 641..714 CDD:143165 13/87 (15%)
IGc2 735..804 CDD:197706 19/69 (28%)
I-set 819..914 CDD:254352 19/95 (20%)
Ig 833..921 CDD:299845 18/88 (20%)
FN3 918..1011 CDD:238020 22/125 (18%)
FN3 1018..1116 CDD:238020 2/8 (25%)
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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