DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment klg and Dscam

DIOPT Version :9

Sequence 1:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus


Alignment Length:711 Identity:152/711 - (21%)
Similarity:245/711 - (34%) Gaps:229/711 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNIISRSIRTGALAPPITAHASANANASGLRKSSQRRN-RAPLQ----------------MNCPI 48
            :||.|..:|.|.:     ...:|| |::|:.....|.| |.|..                ::|.:
Mouse   469 LNISSSQVRDGGV-----YRCTAN-NSAGVVLYQARINVRGPASIRPMKNITAIAGRDTYIHCRV 527

  Fly    49 L--IVISLGWLLHA------HAGSGGFAVEAAISNRGSNSRSMSNVQQ----------------- 88
            :  ...|:.|..:|      |.       :.|..|.|  :..:|:||:                 
Mouse   528 IGYPYYSIKWYKNANLLPFNHR-------QVAFENNG--TLKLSDVQKEVDEGEYTCNVLVQPQL 583

  Fly    89 SAVAASTLTATLPRFLSRGHTYRAVVGDTLVLPCQVENLGN--FVLLWRRGTNVLTASNIMVTRD 151
            |...:..:|..:|.|:......|..:|..:.:||.|.: |:  ..:.|::....:.|| :.||.|
Mouse   584 STSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVS-GDLPITITWQKDGRPIPAS-LGVTID 646

  Fly   152 ERVRLID-GYNLEISDLEPQDAGDYVCQISDKINRDQVHTVE------ILVPPSVRAIPTSGQLQ 209
            .    || ..:|.||:|.....|:|.|     |.|::...||      :.|||.....|.  ...
Mouse   647 N----IDFTSSLRISNLSLMHNGNYTC-----IARNEAAAVEHQSQLIVRVPPKFVVQPR--DQD 700

  Fly   210 ARKGGPITLECKGSGNPVPSIYWTKKSGA----------NKSTARIGDGPILTLEKLERQQAGVY 264
            ...|..:.|.|...|.|||:|.|....||          |.....:.:|.:| ::.:..:.:|.|
Mouse   701 GIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLL-IKHVVEEDSGYY 764

  Fly   265 QCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCIVFADPVATVSWYQNSFPIQ 329
            .|...|.||..|:..|.|.|..|..|....:...:.:|...::.|....:....|.|        
Mouse   765 LCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQGQRKEMSCTAHGEKPIIVRW-------- 821

  Fly   330 STDRRIMATRANRHMLTIRHIQQ-------------EDFGNYSCVADNSLGRSRKYMELSGR--- 378
            ..:.||:.....|::::.:.:.:             ||.|.:||.|.||.|..|..::|:.:   
Mouse   822 EKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 886

  Fly   379 -PGAAEFYSPK-------W-----GRSP------------DSY-------------NLTWKIDSY 405
             |...|....|       |     |.||            ||:             |....||.:
Mouse   887 DPPEIEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDIH 951

  Fly   406 P----------------------------------PLEEVRL----------------------L 414
            |                                  |.:||.|                      :
Mouse   952 PSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGI 1016

  Fly   415 YRRVQMN-ETYQQPGRWHDFILTPEHRPASEPLTHIMSYTIKNLHPGGYYEAIVQAKNRYGWNEV 478
            .|..|:. ..|...|.:...|::.:....||      .||:.||:....|..:|||.||.|....
Mouse  1017 IRGYQIGYREYSTGGNFQFNIISIDTTGDSE------VYTLDNLNKFTQYGLVVQACNRAGTGPS 1075

  Fly   479 SDIFQFVVATNSQDI---GPEDAEVVASS--------KSRSNSASIGSLPGSTVLHTALLL 528
            |   |.::.|..:|:   .||:.:.:|:|        .:.|..|..|.|.|..|::.|.|:
Mouse  1076 S---QEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLI 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
klgNP_524454.2 DUF1370 63..>124 CDD:284518 14/77 (18%)
IG_like 109..195 CDD:214653 25/94 (27%)
Ig 118..191 CDD:143165 21/75 (28%)
IG_like 205..274 CDD:214653 19/78 (24%)
IGc2 213..273 CDD:197706 18/69 (26%)
IGc2 301..367 CDD:197706 15/78 (19%)
FN3 392..486 CDD:238020 32/175 (18%)
DscamXP_006522949.1 Ig 15..115 CDD:386229
IGc2 239..300 CDD:197706
IG 320..400 CDD:214652
Ig_3 410..488 CDD:372822 7/24 (29%)
IGc2 518..575 CDD:197706 11/65 (17%)
Ig 596..686 CDD:386229 27/100 (27%)
Ig_DSCAM 707..784 CDD:143211 22/77 (29%)
Ig 802..889 CDD:386229 18/94 (19%)
FN3 885..978 CDD:238020 13/92 (14%)
FN3 986..1083 CDD:238020 24/105 (23%)
FN3 1091..1184 CDD:238020 12/43 (28%)
FN3 1189..1278 CDD:238020
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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