DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp12-46 and UBP18

DIOPT Version :10

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_194895.1 Gene:UBP18 / 829295 AraportID:AT4G31670 Length:631 Species:Arabidopsis thaliana


Alignment Length:436 Identity:113/436 - (25%)
Similarity:171/436 - (39%) Gaps:119/436 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GANVSQLE-REIGSDLFPPNE--HYF----------GLVNFGNTCYSNSVLQALYFCKPFREKVL 53
            |.|.|.|: ||:   |||..|  .||          ||:|.||:|::|.:||.|.:.:|....:|
plant   136 GQNKSSLKPREV---LFPYEEFVEYFNWDNPELAPCGLMNCGNSCFANVILQCLSWTRPLVAYLL 197

  Fly    54 E--YKAKNKRPKETLLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEKEEFDNYMQQDAHEFLN 116
            |  :|.:..| .:....|........|:|.:  ...:|...|:||...........|:|||||:.
plant   198 EKGHKRECMR-NDWCFLCEFQTHVERASQSR--FPFSPMNIISRLTNIGGTLGYGRQEDAHEFMR 259

  Fly   117 FLINHINEIILAERNAGPSNGNPKATNQGGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGNSSN 181
            :.|:.:..:.|.|              .||.......|                           
plant   260 YAIDMMQSVCLDE--------------FGGEKIVPPRS--------------------------- 283

  Fly   182 STGSLNANTSVLDASGSLTATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSS 246
                                                 .|.|.:..||.|:|.|:.:|..|..||.
plant   284 -------------------------------------QETTLIQYIFGGLLQSQVQCTVCNHVSD 311

  Fly   247 KDENFFDLQVDVDQNT-SITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRVKKLPMILALH 310
            :.||..||.|::..:. |:..||..|:..|.|..||.:|||.|..|.:|.||:.:::.|.||.:.
plant   312 QYENMMDLIVEMHGDAGSLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIA 376

  Fly   311 LKRFKYMEQFNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDLTAVVIHCG--SGPNRGHYISI 373
            |||:    |..|:.|::.|:.||..|.|.....:..:...:|.|.||::|..  :....||||..
plant   377 LKRY----QGGRYGKLNKRISFPETLDLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICY 437

  Fly   374 VKSH-GLWLLFDDDMVDKIEASTIEDFYGLTSDIHKSSETGYILFY 418
            :|.. |.|...||..::.:|   :||..         |:..|:|.|
plant   438 IKDFCGNWYRIDDSEIESVE---LEDVL---------SQRAYMLLY 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 101/400 (25%)
UBP18NP_194895.1 zf-MYND 61..98 CDD:460312
Peptidase_C19E 167..472 CDD:239126 101/402 (25%)
Blue background indicates that the domain is not in the aligned region.

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