DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp12-46 and UBP4

DIOPT Version :9

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_565532.1 Gene:UBP4 / 816763 AraportID:AT2G22310 Length:365 Species:Arabidopsis thaliana


Alignment Length:423 Identity:217/423 - (51%)
Similarity:277/423 - (65%) Gaps:65/423 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGANVSQLEREIGSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKR-PKE 64
            |||..|:||:.:| |.||..|.|||..|||||||.||||||||||.||||::||:.|.||. .:|
plant     1 MGAAGSKLEKALG-DQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEE 64

  Fly    65 TLLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAE 129
            .||:||||||..|::||||.|.||||:|:.||:|:.|.|.:||.||||||||:|:|.:.||:..|
plant    65 NLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEILEKE 129

  Fly   130 RNAGPSNGNPKATNQGGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLD 194
            ..|      .||.|:   ||:....||                                  :||.
plant   130 TQA------TKADNE---TSSSPEKIA----------------------------------NVLK 151

  Fly   195 ASGSLTATTTPIISGNGTGTNGANSEP--TWVHEIFQGILTSETRCLNCETVSSKDENFFDLQVD 257
            |         |:       .||.:.||  ||||:|||||||:|||||.||||:::||.|.||.:|
plant   152 A---------PL-------ANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLSLD 200

  Fly   258 VDQNTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRVKKLPMILALHLKRFKYMEQFNR 322
            ::||:|||.||:.||:||||.:::||.||.|||.|||||||::||.|.||.:||||||||||..|
plant   201 IEQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGR 265

  Fly   323 HIKVSHRVVFPLELRLFNTSDDAVNPDRLYDLTAVVIHCGSGPNRGHYISIVKSHGLWLLFDDDM 387
            :.|:|:||||||||:|.||.|:.|  |..|.|.|||:|.|||||.|||:|:||||..||.|||:.
plant   266 YKKLSYRVVFPLELKLSNTVDEYV--DIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDES 328

  Fly   388 VDKIEASTIEDFYGLTSDIHKSSETGYILFYQS 420
            |:.||.|.::.|:|.:.:...:::.||||.|:|
plant   329 VEIIEESAVQTFFGSSQEYSSNTDHGYILLYES 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 202/396 (51%)
UBP4NP_565532.1 Peptidase_C19G 24..360 CDD:239128 202/396 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 375 1.000 Domainoid score I172
eggNOG 1 0.900 - - E1_KOG1864
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56957
Inparanoid 1 1.050 396 1.000 Inparanoid score I481
OMA 1 1.010 - - QHG54027
OrthoDB 1 1.010 - - D378361at2759
OrthoFinder 1 1.000 - - FOG0001354
OrthoInspector 1 1.000 - - otm2926
orthoMCL 1 0.900 - - OOG6_101733
Panther 1 1.100 - - O PTHR24006
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X844
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.