DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp12-46 and Usp12l1

DIOPT Version :10

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_038956131.1 Gene:Usp12l1 / 501659 RGDID:1561481 Length:363 Species:Rattus norvegicus


Alignment Length:422 Identity:259/422 - (61%)
Similarity:300/422 - (71%) Gaps:70/422 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGANVSQLEREIGSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKRPKET 65
            ||||.|.||:|||.:.||.|||||||||||||||.||:|||||||:|||:|||.||:: .|.||:
  Rat    12 MGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSILQALYFCRPFRDKVLAYKSQ-PRKKES 75

  Fly    66 LLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAER 130
            ||:||||||:||||||||||.|.|||||||||||.|.||||||||||||||:|:|.|.:|:..||
  Rat    76 LLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEER 140

  Fly   131 NAGPSNGNPKATNQGGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLDA 195
            .....||..:                             |...:|..|:|               
  Rat   141 KQEKQNGRLR-----------------------------NGDVDSEDNNS--------------- 161

  Fly   196 SGSLTATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDENFFDLQVDVDQ 260
                    ||              :||||||||||.||:|||||.|||:|||||:|.||.|||:|
  Rat   162 --------TP--------------DPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQ 204

  Fly   261 NTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRVKKLPMILALHLKRFKYMEQFNRHIK 325
            |||||||||.|||||||||:.|:.|:.|.|.|||.|||:||||||||||||||||||:|.:|:.|
  Rat   205 NTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTK 269

  Fly   326 VSHRVVFPLELRLFNTSDDAVNPDRLYDLTAVVIHCGSGPNRGHYISIVKSHGLWLLFDDDMVDK 390
            :|:||||||||||||||.||.||||:|||.|||:||||||||||||:|||||..|||||||:|:|
  Rat   270 LSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEK 334

  Fly   391 IEASTIEDFYGLTSDIHKSSETGYILFYQSRD 422
            |:|..||:||||||||.|:||:   ..:||||
  Rat   335 IDAQAIEEFYGLTSDISKNSES---RDFQSRD 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 238/393 (61%)
Usp12l1XP_038956131.1 Peptidase_C19G 36..356 CDD:239128 237/386 (61%)

Return to query results.
Submit another query.