DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp12-46 and Usp47

DIOPT Version :9

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:484 Identity:105/484 - (21%)
Similarity:157/484 - (32%) Gaps:182/484 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 YFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKRPKETLLSCLADLFYSIATQKKKVGSI 87
            |.||||...|||.||:||||:....||..:..::..|....:.:...|..||.::.|        
  Fly   395 YVGLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPYQLQKLFLNLQT-------- 451

  Fly    88 APKKFI--TRLRKE--KEEFDNYMQQDAHEFLNFLINHINEIILAERNAGPSNGNPKATNQGGST 148
            :||..:  |.|.:.  .:..:.:.|.|..|...                                
  Fly   452 SPKAAVETTDLTRSFGWDSTEAWQQHDIQELCR-------------------------------- 484

  Fly   149 SAMASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLDASGSLTATTTPIISGNGTG 213
             .|..::..|..:|..:|..||                                           
  Fly   485 -VMFDALEHKFKNTKQANLISN------------------------------------------- 505

  Fly   214 TNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDENFFDLQVDV------DQNTSITHCLRCFS 272
                         :::|.:....:||.|.|..::::.|.|:.:.|      ....||...||.|.
  Fly   506 -------------LYEGKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFV 557

  Fly   273 NTETLCSDNKFKCDNCCSYQEAQKRMRVKKLPMILALHLKRFKYMEQFNRHIKVSHRVVFP--LE 335
            ..|||..:|::.|:.|....:|.|.:..|..|.||.||||||.:..|....||::.||.||  |.
  Fly   558 QPETLDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLN 622

  Fly   336 LRLF---------------NTSDDAVNPDR----------------------------------- 350
            |..|               .|.||....|.                                   
  Fly   623 LNTFINRSGNSGEQNSQLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDM 687

  Fly   351 ---------------LYDLTAVVIHCGSGPNRGHYISIVK--SHGLWLLFDDDMVDKIEASTIED 398
                           ||:|.|::||.||. :.|||.:.:|  .:..|..|:|..|..|....|:.
  Fly   688 SSSTSKSAKQGSGPYLYELFAIMIHSGSA-SGGHYYAYIKDFDNNEWFCFNDQNVTSITQEDIQR 751

  Fly   399 FYG-----LTSDIHKSSETGYILFYQSRD 422
            .:|     ..|..:.||...|:|.|:..|
  Fly   752 SFGGPNGSYYSSAYTSSTNAYMLMYRQVD 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 102/477 (21%)
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188
Rib_recp_KP_reg 122..265 CDD:282899
peptidase_C19C 394..780 CDD:239124 104/482 (22%)
UCH 395..776 CDD:278850 103/478 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.