DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp12-46 and Usp5

DIOPT Version :9

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001246589.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster


Alignment Length:619 Identity:96/619 - (15%)
Similarity:153/619 - (24%) Gaps:324/619 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EIGSDLFP-PNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVL------EYKAKNKRPKETLLS 68
            |..|:|.| ....|.|:.|.||:||.|||:|.|:....|:::.:      .:|.....|......
  Fly   318 ESESELQPVAGPGYTGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNI 382

  Fly    69 CLADLFYSIATQKKKVGSIA-------------PKKFITRLRKEKEEFDNYMQQDAHEFLNFLIN 120
            .:|.|  ....|..|..|||             |..|...:.|...:|....||||::|      
  Fly   383 QMAKL--GTGLQSGKYSSIAENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDF------ 439

  Fly   121 HINEIILAERNAGPSNGNPKATNQGGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGS 185
            :::.:.|.:|                                               ||.|.|..
  Fly   440 YLHLLTLLDR-----------------------------------------------NSRNQTNP 457

  Fly   186 LNANTSVLDASGSLTATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETV--SSKD 248
            .:|                                       .:.:|.....||....|  ::::
  Fly   458 ADA---------------------------------------LKFLLEDRVECLASHKVKYNTRE 483

  Fly   249 ENFFDLQVDVDQNTSITH--------------------------------CLRCFSNTETLCSDN 281
            |..|.|.|.:|:.|::..                                ||..|...|.:   .
  Fly   484 EYSFRLPVPLDKATNLDEVREFQERKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELI---E 545

  Fly   282 KFKCDNCCSYQEAQKRMRVKKLPMILALHLKRFKYMEQF-NRHIKVSHRVVFPLELRLFN----- 340
            :|......|...|:|..|:..:|..|.:|:.:|...:.: .:.:.||  |..|.||.|.|     
  Fly   546 QFYSTAIGSKTNARKITRLATMPDCLMIHVGKFTLGDDWVPKKLDVS--VDMPDELDLSNWRSAG 608

  Fly   341 -------------------TSDDAV---------------------------------------- 346
                               ..|:||                                        
  Fly   609 GLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPPEACKRACYHTKNSGLEAASNWLMEHIADE 673

  Fly   347 -----------------------NPDRL------------------------------------- 351
                                   ||:.|                                     
  Fly   674 DISEPFVVPNNSIGDCAANQFVANPESLAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADS 738

  Fly   352 --------------------------------YDLTAVVIHCGSGPNRGHYISIVKSHGLWLLFD 384
                                            |.|.|.:.|.|:....|||:..::..|.|::|:
  Fly   739 IGVEDAAPAANSSAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGEWVIFN 803

  Fly   385 DDMVDKIEASTIEDFYGLTSDIHKSSETGYILFY 418
            |..|.|.:              :...:.||:..|
  Fly   804 DSKVAKSQ--------------NPPKDLGYLYLY 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 91/604 (15%)
Usp5NP_001246589.1 UBP14 24..825 CDD:227532 96/619 (16%)
zf-UBP 204..278 CDD:280334
Peptidase_C19B 333..823 CDD:239123 90/602 (15%)
UBA1_UBP5_like 631..674 CDD:270480 2/42 (5%)
UBA2_UBP5 696..737 CDD:270569 3/40 (8%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.