DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp12-46 and Usp42

DIOPT Version :10

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001099379.1 Gene:Usp42 / 288482 RGDID:1305231 Length:1325 Species:Rattus norvegicus


Alignment Length:444 Identity:104/444 - (23%)
Similarity:167/444 - (37%) Gaps:138/444 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EREIGSDLFPPNEHYF-----------------GLVNFGNTCYSNSVLQALYFCKPFREKVLEYK 56
            ::.:|..:.||.:..|                 ||.|.||||::|:.||.|.:..|....:|.: 
  Rat    78 DQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSH- 141

  Fly    57 AKNKRPKETLLSCLADLFYSIATQKKKVGS--------IAPKKFITRLRKEKEEFDNYMQQDAHE 113
                   |...:|.|:.|..:.|.:..:..        |.|...|..:|:....|....|:||||
  Rat   142 -------EHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHE 199

  Fly   114 FLNFLINHINEIILAERNAGPSNGNPKATNQGGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGN 178
            ||.:.::.:.:..|                                                   
  Rat   200 FLQYTVDAMQKACL--------------------------------------------------- 213

  Fly   179 SSNSTGSLNANTSVLDASGSLTATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCET 243
              |.:..|:.:|.         |||.                   |.:||.|.|.|..:||||:.
  Rat   214 --NGSNKLDRHTQ---------ATTL-------------------VCQIFGGYLRSRVKCLNCKG 248

  Fly   244 VSSKDENFFDLQVDVDQNTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRVKKLPMILA 308
            ||...:.:.|:.:::....|:|..|..|...|.|..:|.:||..|.....|.||..:.:...:|.
  Rat   249 VSDTFDPYLDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLT 313

  Fly   309 LHLKRFKYMEQFNRHIKVSHRVVFP--LELRLFNTSDDAVNPDRLYDLTAVVIHCGSGPNRGHYI 371
            :.||||   ..|... |::..|.:|  |::|.:.:..:  ....:|.|.||::|.|...:.|||.
  Rat   314 ISLKRF---ANFTGG-KIAKDVKYPEYLDIRPYMSQPN--GEPIIYVLYAVLVHTGFNCHAGHYF 372

  Fly   372 SIVK-SHGLWLLFDDDMVDKIEASTIEDFYGLTSDIHK-SSETGYILFY-QSRD 422
            ..:| |:|||...:|.:|.             ||||.. .::..|:||| :|.|
  Rat   373 CYIKASNGLWYQMNDSIVS-------------TSDIRSVLNQQAYVLFYIRSHD 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 98/406 (24%)
Usp42NP_001099379.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 64..86 1/7 (14%)
Peptidase_C19E 109..409 CDD:239126 97/407 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..502
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 539..590
DUF5585 567..952 CDD:465521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 602..674
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 718..780
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 802..849
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 879..1032
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1146..1259
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1290..1325
Blue background indicates that the domain is not in the aligned region.

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