DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp12-46 and duo-1

DIOPT Version :9

Sequence 1:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_505931.3 Gene:duo-1 / 179586 WormBaseID:WBGene00001110 Length:877 Species:Caenorhabditis elegans


Alignment Length:655 Identity:129/655 - (19%)
Similarity:199/655 - (30%) Gaps:282/655 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IGSDLFPPNEH-YFGLVNFGNTCYSNSVLQALYFCKP------------------FREKVLEYKA 57
            :.||:|....| ...|||.||:||.||.:||:..|.|                  |.:.:...:|
 Worm   256 LSSDVFLRKLHENRQLVNTGNSCYYNSTMQAVSSCNPLVIRCEQLYRMVRDNIELFDDSMNNDQA 320

  Fly    58 KNKRPKETL------LSCLADLF-------------YSIATQKKKVGSIAPKKFITRLRKEKEEF 103
            ..||....|      :.||...|             |.:...::.||.|            .|||
 Worm   321 DIKRKYIVLQNFLKVVICLGWHFNKRNEGKSIELRRYDLLQYRQNVGKI------------NEEF 373

  Fly   104 DNYMQQDAHEFLNFLINHINEII-LAERNA---------------------------GPSNGNPK 140
            :|..||||||||..||..:::.: :..:|.                           |.||...|
 Worm   374 NNDDQQDAHEFLLTLIGAVDDAMGVMSKNVKTIDNVGITLNPARAFKIDVETMYVCQGCSNEELK 438

  Fly   141 ATNQ---------GGSTSAMASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLDAS 196
            ..::         |.|...:.||....|......:|..:..::|....|.....|..|....:..
 Worm   439 VDSRNDLGVSVMDGCSVQKLVSSFVKWSPIEKECSSCKHKISSSCERISTFPECLIINLKRYELE 503

  Fly   197 G-----SLTATTTPI-------ISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCE-----TV 244
            |     |:...:..:       :|..|      |..|....|:|:....|.|..:|.|     .:
 Worm   504 GQGPPFSMKKKSCRVEPSFKLDVSSLG------NFPPVEHPEMFENKEYSTTEPVNSEDSRLAEI 562

  Fly   245 SSKDENFFDLQVD------VDQNTSITHC--------------LRCFSNTETLCSD--NKFKCDN 287
            ::.|.:|.|.:|.      .|:..|  .|              ...|||.:.. .|  ::...:|
 Worm   563 TTDDAHFNDSRVSGRLLGGADEEMS--QCSVIVEDVKKRKELYFNIFSNEKDF-DDILDEMGINN 624

  Fly   288 CCSYQEAQKRMRVKK-------------LP----------------------------MI----L 307
                .|.|||...::             ||                            ||    :
 Worm   625 ----GENQKRFHFERHITGPPSKMYQFQLPGATRGITPDGNCFYRAISWWITGVQSHHMIFREAV 685

  Fly   308 ALHLKR----FK----------------------------------------------------- 315
            ..|||:    ||                                                     
 Worm   686 GKHLKKNELMFKKYCHNEIYEKYVENAMRDGVWATTCEIFAMANMLNVEIITYLGDSGWVPHSPQ 750

  Fly   316 ----------YMEQFNRHIK--VSHRVVFP--LELRLFNTSDDAVNPDRL--------------Y 352
                      |::..|.|.:  .|.|...|  ..::..||:..::: |.|              |
 Worm   751 NNYPPRKGAIYLKNTNMHYEPTTSLRKNSPERSPMKKENTNGSSMH-DELDENDYLKSDIHPGTY 814

  Fly   353 DLTAVVIHCGSGPNRGHYISIVK---SHGLWLLFDDDMVDKIEASTIEDFYGLTSDIHKSSETGY 414
            .|.|||.|.|..||:|||::..|   .:..||...||.:..:..:.:       |:..:||  ||
 Worm   815 SLVAVVCHLGDSPNKGHYVAYTKELYKNSSWLRCSDDNIYAVSKNDV-------SEAIRSS--GY 870

  Fly   415 ILFYQ 419
            ::||:
 Worm   871 LMFYE 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 124/639 (19%)
duo-1NP_505931.3 Peptidase_C19Q 270..875 CDD:239138 124/639 (19%)
OTU 657..>743 CDD:303090 7/85 (8%)
Peptidase_C19 <750..861 CDD:271592 27/111 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1864
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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