DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17141 and Gnl3

DIOPT Version :9

Sequence 1:NP_651094.2 Gene:CG17141 / 42697 FlyBaseID:FBgn0039020 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_705775.2 Gene:Gnl3 / 30877 MGIID:1353651 Length:538 Species:Mus musculus


Alignment Length:284 Identity:75/284 - (26%)
Similarity:128/284 - (45%) Gaps:58/284 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 QKLRNV----DCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNKVDLLGAKQQKSVLQQLR 96
            |:|:.|    |.::|:.|||.||..|..|..:.:..||.|..||||||.||:..:..::.|..|.
Mouse   130 QELKKVIEASDIVLEVLDARDPLGCRCPQIEEAVIQSGSKKLILVLNKSDLVPKENLENWLNYLN 194

  Fly    97 RQQPELQHILFTNCKDQRNNGV--LDILPLATRLVSESSR-------FNRTQAAEHNLMIIGVPN 152
            ::.|.:.....||.|:::...:  ..::|..:::......       |.::...:..:.:||.||
Mouse   195 KELPTVVFKASTNLKNRKTFKIKKKKVVPFQSKICCGKEALWKLLGDFQQSCGKDIQVGVIGFPN 259

  Fly   153 VGKSSVINVLRNVHLKKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKDDEMGM 217
            ||||||||     .||::....||...|:|||: :.:.:.:.  :.:||:|.::   |.......
Mouse   260 VGKSSVIN-----SLKQEWICNVGISMGLTRSM-QIVPLDKQ--ITIIDSPCLI---ISPCNSPT 313

  Fly   218 KLALVGCLPDHIVGEDLIADYLLYWLNSHRKYDYVEMLKLSSGPSDDISAVLAEYAHREE--LFH 280
            .|||                         |....:|.|:    |.:..||:|:: |..|:  |.:
Mouse   314 ALAL-------------------------RSPASIEELR----PLEAASAILSQ-ADNEQVVLKY 348

  Fly   281 KVKQYDGRVEVMTNLLAAARKFIH 304
            .|.:|...:...|.|  |.|:.:|
Mouse   349 TVPEYKDSLHFFTKL--AQRRGLH 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17141NP_651094.2 GTPase_YlqF 20..317 CDD:274669 75/284 (26%)
YlqF 22..206 CDD:206749 54/182 (30%)
Gnl3NP_705775.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..57
Basic. /evidence=ECO:0000250 2..46
GN3L_Grn1 16..93 CDD:285863
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..126
GTPase_YlqF 130..395 CDD:274669 75/284 (26%)
Nucleostemin_like 140..302 CDD:206753 50/169 (30%)
Intermediate. /evidence=ECO:0000250 277..451 30/132 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..538
Acidic. /evidence=ECO:0000250 460..532
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.