DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17141 and lsg1

DIOPT Version :10

Sequence 1:NP_651094.2 Gene:CG17141 / 42697 FlyBaseID:FBgn0039020 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_002937880.1 Gene:lsg1 / 100145528 XenbaseID:XB-GENE-990730 Length:637 Species:Xenopus tropicalis


Alignment Length:405 Identity:87/405 - (21%)
Similarity:143/405 - (35%) Gaps:149/405 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AQLNPFRNAFRLPSKQRINWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQ---FFDT 64
            |||...:.....|.::.::::        ||:.:.:...|.:|:|.|||.||..|...   :...
 Frog   142 AQLEEEKKLILTPFERNLDFW--------RQLWRVIERSDVVVQIVDARNPLLFRCQDLECYVKE 198

  Fly    65 ITGSGVKPHILVLNKVDLLGAKQQKSVLQQLRRQ------------------QPELQHI------ 105
            |...  |.:|:::||.|||.|:|::|..:...::                  :.:::|:      
 Frog   199 IDKD--KENIILINKADLLTAQQRQSWAEFFEKEGVKVVFWSALAEGQRLTAEGKVEHLDEIKEN 261

  Fly   106 --LFT---------------NCKDQRNNGV--------------------------LDILPL--- 124
              .||               |...:.|:|:                          .||:..   
 Frog   262 EGDFTDEEESESESEETQGENLHTRGNSGLDNDTSEEYEDCEEDEGWQTCSEDADDDDIISQDKD 326

  Fly   125 ATRLVSESSRFNRTQAAEHNLM---------------------IIGVPNVGKSSVIN-VLRNVHL 167
            .||.|.:....|::...|.:.:                     ::|.|||||||.|| :|.|   
 Frog   327 HTRTVGDKLITNQSHLVERDELLEIFKSVHAGQRIKEGQITVGLVGYPNVGKSSTINTILGN--- 388

  Fly   168 KKKSAARVGAEAGITRSVGERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLP-----D 227
            ||.|   |.|..|.|:........||   :.:.|.||::.||....:..|..:  |.||     |
 Frog   389 KKVS---VSATPGHTKHFQTLYVEQE---LCLCDCPGLVMPSFVSTKAEMICS--GILPIDQMRD 445

  Fly   228 HIVGEDLIADYL-------LYWLNSHR------------------KYDYVEMLKLSSG-PSDDIS 266
            |:....|||..:       :|.:|..|                  .|.|:.....:.| |....|
 Frog   446 HVPPISLIAQRIPRHALETIYGINIIRPREDEDQDRPPTSEEFLCAYGYMRGFMTAHGQPDQPRS 510

  Fly   267 A--VLAEYAHREELF 279
            |  ||.:|...:.|:
 Frog   511 ARYVLKDYVSGKLLY 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17141NP_651094.2 GTPase_YlqF 20..317 CDD:274669 83/388 (21%)
lsg1XP_002937880.1 HSR1_MMR1 161..423 CDD:206750 59/280 (21%)
RbgA 173..523 CDD:440775 80/362 (22%)

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