DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1c and Cbx6

DIOPT Version :9

Sequence 1:NP_651093.1 Gene:HP1c / 42696 FlyBaseID:FBgn0039019 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_083039.2 Gene:Cbx6 / 494448 MGIID:3512628 Length:414 Species:Mus musculus


Alignment Length:116 Identity:36/116 - (31%)
Similarity:53/116 - (45%) Gaps:28/116 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPNLIQKFEESRAK-----SKKRGE 67
            |..|.|:.:|| .:|::||.:||:|:....:|||||||.....||..||:...:     .|||| 
Mouse    11 FAAESIIKRRI-RKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPKKRG- 73

  Fly    68 KKPKCEEIQKLRGYERGLELAEIVGATDVTGDIKYLVRWQFCDEFDLVPSA 118
            .||| ..:.|.|.....|.::::                    .|.:.|||
Mouse    74 PKPK-TFLLKARAQAEALRISDV--------------------HFSVKPSA 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1cNP_651093.1 Chromo 9..58 CDD:278797 21/48 (44%)
Chromo_shadow 89..134 CDD:279701 4/30 (13%)
Cbx6NP_083039.2 CHROMO 10..62 CDD:214605 22/51 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..152
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..308
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..365
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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