Protein Alignment HP1c and Cbx1

DIOPT Version :10

• Sequence 1: NP_651093.1
• Gene: HP1c / 42696
• FlyBaseID: FBgn0039019
• Length: 237
• Species: Drosophila melanogaster
• Sequence 2: XP_006247295.1
• Gene: Cbx1 / 360609
• RGDID: 1310714
• Length: 193
• Species: Rattus norvegicus
• Alignment Length: 160
• Identity: 61/160 - (38%)
• Similarity: 101/160 - (63%)
• Gaps: 29/160 - (18%)

  Fly     3 KNEPNFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPNLIQKFEESR-------- 59
            :.|..:|||:::|:|:. :|||||.:||:|::..|||||||||.|||:||.:|.:|:
  Rat    16 EEEEEYVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDK 79

  Fly    60 ---------AKSKKRGEK-KPKCE----------EIQKLRGYERGLELAEIVGATDVTGDIKYLV 104
                     :.|:.:||: |||.:          :.:|.||:.||||...|:||||.:|::.:|:
  Rat    80 SDGGKRKADSDSEDKGEESKPKKKKEEALPIWFLQSEKPRGFARGLEPERIIGATDSSGELMFLM 144

  Fly   105 RWQFCDEFDLVPSAQIVEKDPQMLIDYFQK 134
            :|:..||.||||:.:...|.||::|.::::
  Rat   145 KWKNSDEADLVPAKEANVKCPQVVISFYEE 174

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1c	NP_651093.1	CD_CSD	8..55	CDD:475127	27/46 (59%)
		CSD	85..135	CDD:349275	20/50 (40%)
Cbx1	XP_006247295.1	CD_HP1beta_Cbx1	20..69	CDD:349297	28/49 (57%)
		CSD_HP1beta_Cbx1	120..177	CDD:349301	23/55 (42%)