Protein Alignment HP1c and Cbx2

DIOPT Version :9

• Sequence 1: NP_651093.1
• Gene: HP1c / 42696
• FlyBaseID: FBgn0039019
• Length: 237
• Species: Drosophila melanogaster
• Sequence 2: NP_001100541.1
• Gene: Cbx2 / 303730
• RGDID: 1588561
• Length: 523
• Species: Rattus norvegicus
• Alignment Length: 226
• Identity: 63/226 - (27%)
• Similarity: 94/226 - (41%)
• Gaps: 66/226 - (29%)

  Fly     5 EPNFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPNLIQKFE----ESRAKSKKR 65
            |..|..|.|:.||: .:||:||.:||||::|..|:||||||...|.|:..|:    |...:::||
  Rat     9 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRKR 72

  Fly    66 GEKKPK-----------CEEIQKLRGYERGLELAEIVGATDVTG-----------DIKYLVRWQF 108
            | |:|:           |....||:..:...:......::..|.           |
  Rat    73 G-KRPRGRPRKHTVMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSSDEEEEDD--------- 127

  Fly   109 CDEFDL-------------VP--SAQIVEKDPQMLIDYFQKM-----APYSRHIAMRMKGVPEEL 153
             |:.||             ||  .|||:...|: |.|..:|.     .|..:..|.|    |..|
  Rat   128 -DDSDLDSKRGSRGRETHPVPQKKAQILVAKPE-LKDPIRKKRGRKPLPPEQKAARR----PVSL 186

  Fly   154 RLAASRTSYPHISSAPVEVPPEVDQSAELAG 184
            ......|....::||| ::||.:  ||.:||
  Rat   187 AKVLKTTRKDLVTSAP-KLPPPL--SAPVAG 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1c	NP_651093.1	Chromo	9..58	CDD:278797	23/52 (44%)
		Chromo_shadow	89..134	CDD:279701	13/70 (19%)
Cbx2	NP_001100541.1	Chromo	15..61	CDD:278797	23/46 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1628171at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920