Protein Alignment HP1c and cbx3

DIOPT Version :10

• Sequence 1: NP_651093.1
• Gene: HP1c / 42696
• FlyBaseID: FBgn0039019
• Length: 237
• Species: Drosophila melanogaster
• Sequence 2: XP_017949990.2
• Gene: cbx3 / 100038121
• XenbaseID: XB-GENE-492315
• Length: 227
• Species: Xenopus tropicalis
• Alignment Length: 151
• Identity: 64/151 - (42%)
• Similarity: 97/151 - (64%)
• Gaps: 26/151 - (17%)

  Fly     5 EP-NFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPNLIQKFEESRAKSKKRGEK 68
            || .||||:::|:|:.: ||||||:||:|:|.:|||||||||.|||.||:.|    ..|:|.|::
 Frog    69 EPEEFVVEKVLDRRVVN-GKVEYYLKWKGFTDSDNTWEPEENLDCPELIEAF----LNSQKAGKE 128

  Fly    69 KP--------------------KCEEIQKLRGYERGLELAEIVGATDVTGDIKYLVRWQFCDEFD 113
            ||                    |.|.:.|.||:.|||:...|:||||.:|::.:|::|:..||.|
 Frog   129 KPDSNKRKSVSDSESEDSKSKKKRETVDKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEAD 193

  Fly   114 LVPSAQIVEKDPQMLIDYFQK 134
            |||:.:...|.||::|.::::
 Frog   194 LVPAKEANVKCPQVVIAFYEE 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1c	NP_651093.1	CD_CSD	8..55	CDD:475127	30/46 (65%)
		CSD	85..135	CDD:349275	19/50 (38%)
cbx3	XP_017949990.2	CD_HP1gamma_Cbx3	72..121	CDD:349299	31/53 (58%)
		CSD_HP1beta_Cbx1	160..217	CDD:349301	22/55 (40%)