DRSC/TRiP Functional Genomics Resources

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Protein Alignment vret and Snd1

DIOPT Version :10

Sequence 1:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_073185.2 Gene:Snd1 / 64635 RGDID:631340 Length:909 Species:Rattus norvegicus


Alignment Length:663 Identity:131/663 - (19%)
Similarity:215/663 - (32%) Gaps:209/663 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 IKCITGRPQKEREITSDPVTSTEPMPTPGPAISATERTPVNHNREVPI---STGGQN------HP 175
            |||.|.|.:.:...|.:|..:.....|....:          .|:|.|   |...||      ||
  Rat   225 IKCPTFRRETDGSETPEPFAAEAKFFTESRLL----------QRDVQIILESCHNQNILGTILHP 279

  Fly   176 EFFRPPLVTKDD-----------YKRGS---LLATNDPIQRYLNVKYEFA-----LERHD---IY 218
            ......|:.|:.           |.||:   ..|.....:|.|.:..::.     |::.|   :.
  Rat   280 NGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVPPTANLDQKDKQFVA 344

  Fly   219 KLKDETRIPQVVLHFRSG--RTIPLSTVAVTE------EDKTKSLLEDGVSKCVVCQNWTDTFCK 275
            |:........:|:...||  :||.||::....      :||.|.|.                  .
  Rat   345 KVMQVLNADAIVVKLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLR------------------P 391

  Fly   276 LCKMPFCNASCFADVAEQHKQACGKGEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQ------- 333
            |..:|:    .|.......|:..||...:.:|      |.:|..|.:.:   :.||.:       
  Rat   392 LYDIPY----MFEAREFLRKKLIGKKVSVTVD------YIRPASPATET---VPAFSERTCATVT 443

  Fly   334 ---------------TNVVYVRSADIQIDIAYYTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEG 383
                           ..|:..|..|.|....|..:|.......|:...|.|          |.|.
  Rat   444 IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHS----------KKEV 498

  Fly   384 HMSRAMVLNVDNIK--------------EIYVVFIDFGSVEVTQLERLY----EC--SSYLAGLT 428
            .:.|...::.|..|              |..|.::..||    :| :||    .|  :..|||:.
  Rat   499 PIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGS----RL-KLYLPKETCLITFLLAGIE 558

  Fly   429 CYPVAVKLRGVPRRFVGPNIREVMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEID-------- 485
            |...|..|.|:.:.  |....|......:.||...:.........|....:....:|        
  Rat   559 CPRGARNLPGLVQE--GEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLL 621

  Fly   486 INRSLNRL---------FKTILT-------------------PVEPSVSDLGYKEDCLPYIPLHC 522
            :..:|:::         :|.:|:                   |||..:..|..||....|.|:. 
  Rat   622 VEHALSKVHFTAERSAYYKPLLSAEEAAKQRKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVF- 685

  Fly   523 GKNINVVVMDNTFIQCGFIYCTSIDLAYEVTK----MQRDIQEY----GEKIAKCATYAPPINEL 579
               :..:..|..|      |...::...::.|    |:.||..:    |       .|||...|.
  Rat   686 ---VTEITDDLHF------YVQDVETGTQLEKLMENMRSDISSHPPVEG-------AYAPRRGEF 734

  Fly   580 CIAKY-EGKWRRGLSVELVGDGYPSILFIDYGN--IVPTHVTDIRPYPPQF---IFPIMTTQLDL 638
            ||||: :|:|.|....::.......:.:|||||  |:|:  |.:...||.|   :.|...|:...
  Rat   735 CIAKFVDGEWYRARVEKVESPAKVHVFYIDYGNREILPS--TRLGALPPAFSTRVLPAQATEYAF 797

  Fly   639 IGVPEKPTDEQIK 651
            ..: :.|.||..:
  Rat   798 AFI-QVPQDEDAR 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vretNP_651092.1 TUDOR 322..438 CDD:425754 30/157 (19%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 13/72 (18%)
TUDOR 524..640 CDD:425754 32/129 (25%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 19/60 (32%)
Snd1NP_073185.2 SNc 20..165 CDD:214615
SNc 192..327 CDD:214615 24/111 (22%)
Nuclear localization signal. /evidence=ECO:0000255 320..324 2/3 (67%)
SNc 349..495 CDD:238102 32/186 (17%)
Nuclear localization signal. /evidence=ECO:0000255 387..391 2/21 (10%)
SNc 524..659 CDD:214615 24/141 (17%)
Tudor_TDRD11 702..784 CDD:410504 26/90 (29%)
SNc <843..894 CDD:469627
Blue background indicates that the domain is not in the aligned region.

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